预算上的进化设计:噬菌体T7的稳健性和最优性。

L You, J Yin
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引用次数: 15

摘要

探索生物系统是如何通过进化“设计”来实现健壮的行为的,现在是一个越来越多的研究努力的主题。然而,目前尚不清楚环境因素如何影响这一过程。这个问题是通过采用详细的计算机模型的噬菌体T7细胞内生长来解决的。我们产生了超过15万个硅T7突变体,并评估了它们在两种宿主环境下的生长速度和效率,一种是为噬菌体功能合成提供有限宿主资源的现实环境,另一种是为噬菌体提供无限宿主资源的假设环境。结果揭示了噬菌体T7的两个关键特性。首先,T7的生长相对于其参数的扰动总体上是稳健的,但相对于其遗传元素顺序的变化是脆弱的。其次,野生型T7在有限环境下具有接近最优的适应度。此外,在有限环境中,适应度与生长效率之间存在很强的相关性。结果强调了环境在塑造生物系统健壮设计中的潜在重要性。特别是,适应度和生长效率之间的强相关性表明,T7可能已经进化到通过最小化有限资源的浪费来最大化其生长速度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Evolutionary design on a budget: robustness and optimality of bacteriophage T7.

Exploring how biological systems have been 'designed' by evolution to achieve robust behaviours is now a subject of increasing research effort. Yet, it still remains unclear how environmental factors may contribute to this process. This issue is addressed by employing a detailed computer model for the intracellular growth of phage T7. More than 150 000 in silico T7 mutants were generated and the rates and efficiencies of their growth in two host environments, namely, a realistic environment that offered finite host resources for the synthesis of phage functions and a hypothetical environment where the phage was supplied infinite host resources, were evaluated. Results revealed two key properties of phage T7. First, T7 growth was overall robust with respect to perturbations in its parameters, but fragile with respect to changes in the ordering of its genetic elements. Secondly, the wild-type T7 had close to optimal fitness in the finite environment. Furthermore, a strong correlation was found between fitness and growth efficiency in the finite environment. The results underscore the potential importance of the environment in shaping robust design of a biological system. In particular, the strong correlation between fitness and growth efficiency suggests that T7 may have evolved to maximise its growth rate by minimising waste of finite resources.

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