生化网络模型的稳健性分析。

J Kim, D G Bates, I Postlethwaite, L Ma, P A Iglesias
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引用次数: 91

摘要

经过实验验证,生物系统对其环境的重大变化具有鲁棒性,因此需要具有鲁棒性的数学模型。在这种情况下,模型鲁棒性的一个必要条件是模型动力学对模型参数的微小变化不敏感。这种类型的鲁棒性分析问题在鲁棒控制理论领域得到了广泛的研究,并且通常很难解决。作者描述了如何使用鲁棒控制理论和非线性优化的一些工具来分析最近提出的分子网络模型的鲁棒性,该模型是在趋化Dictyostelium细胞中观察到的腺苷3',5'-环单磷酸腺苷(cAMP)振荡的分子网络模型。该网络模型由7个耦合非线性微分方程组成,准确再现了在盘状天牛发育早期观察到的cAMP自发振荡。然而,作者的分析表明,模型参数的微小变化可以有效地破坏所需的振荡动力学。对分析结果的生物学解释是,所提出的模型中特定正反馈回路的正确功能对于维持所需的振荡动力学至关重要。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Robustness analysis of biochemical network models.

Biological systems that have been experimentally verified to be robust to significant changes in their environments require mathematical models that are themselves robust. In this context, a necessary condition for model robustness is that the model dynamics should not be sensitive to small variations in the model's parameters. Robustness analysis problems of this type have been extensively studied in the field of robust control theory and have been found to be very difficult to solve in general. The authors describe how some tools from robust control theory and nonlinear optimisation can be used to analyse the robustness of a recently proposed model of the molecular network underlying adenosine 3',5'-cyclic monophosphate (cAMP) oscillations observed in fields of chemotactic Dictyostelium cells. The network model, which consists of a system of seven coupled nonlinear differential equations, accurately reproduces the spontaneous oscillations in cAMP observed during the early development of D. discoideum. The analysis by the authors reveals, however, that very small variations in the model parameters can effectively destroy the required oscillatory dynamics. A biological interpretation of the analysis results is that correct functioning of a particular positive feedback loop in the proposed model is crucial to maintaining the required oscillatory dynamics.

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