细胞质硫转移酶(SULT)超家族的命名系统。

Rebecca L Blanchard, Robert R Freimuth, Jochen Buck, Richard M Weinshilboum, Michael W H Coughtrie
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引用次数: 315

摘要

建立了细胞质硫转移酶(SULT)超家族的命名体系。命名指南应用于65个SULT cdna和18个SULT基因,这些基因来自真核生物。通过查询GenBank数据库并从已发表的鉴定和表征报告中鉴定SULT cDNA和基因序列。这些序列的评估和命名是基于编码氨基酸序列的一致性,在少数情况下,需要保持历史命名惯例。家族成员至少有45%的氨基酸序列相同,而亚家族成员至少有60%相同。编码至少97%相同的氨基酸序列的cdna被赋予相同的异构体名称。我们还试图对不同物种之间的同源酶进行分类,这些酶已经被鉴定出来,命名法包括一个物种描述符。我们提出了SULT基因的等位基因变异及其衍生的等位酶的命名建议,这些等位基因变异是由单核苷酸多态性和其他遗传变异引起的。该超家族目前包括47个哺乳动物SULT异构体、1个昆虫异构体和8个植物酶,这些序列总共代表9个独立的SULT家族和14个亚家族。希望这一命名系统将被广泛采用,并且随着新的sult被识别和表征,研究人员将根据这些指南命名他们的发现。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A proposed nomenclature system for the cytosolic sulfotransferase (SULT) superfamily.

A nomenclature system for the cytosolic sulfotransferase (SULT) superfamily has been developed. The nomenclature guidelines were applied to 65 SULT cDNAs and 18 SULT genes that were characterized from eukaryotic organisms. SULT cDNA and gene sequences were identified by querying the GenBank databases and from published reports of their identification and characterization. These sequences were evaluated and named on the basis of encoded amino acid sequence identity and, in a few cases, a necessity to maintain historical naming convention. Family members share at least 45% amino acid sequence identity whereas subfamily members are at least 60% identical. cDNAs which encode amino acid sequences of at least 97% identity to each other were assigned identical isoform names. We also attempted to categorize orthologous enzymes between various species, where these have been identified, and the nomenclature includes a species descriptor. We present recommendations for the naming of allelic variants of SULT genes and their derived allozymes arising from single nucleotide polymorphisms and other genetic variation. The superfamily currently comprises 47 mammalian SULT isoforms, one insect isoform and eight plant enzymes, and collectively these sequences represent nine separate SULT families and 14 subfamilies. It is hoped that this nomenclature system will be widely adopted and that, as novel SULTs are identified and characterized, investigators will name their discoveries according to these guidelines.

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