可逆希尔方程:如何将合作酶纳入代谢模型。

J H Hofmeyr, A Cornish-Bowden
{"title":"可逆希尔方程:如何将合作酶纳入代谢模型。","authors":"J H Hofmeyr,&nbsp;A Cornish-Bowden","doi":"10.1093/bioinformatics/13.4.377","DOIUrl":null,"url":null,"abstract":"<p><strong>Motivation: </strong>Realistic simulation of the kinetic properties of metabolic pathways requires rate equations to be expressed in reversible form, because substrate and product elasticities are drastically different in reversible and irreversible reactions. This presents no special problem for reactions that follow reversible Michaelis-Menten kinetics, but for enzymes showing cooperative kinetics the full reversible rate equations are extremely complicated, and anyway in virtually all cases the full equations are unknown because sufficiently complete kinetic studies have not been carried out. There is a need, therefore, for approximate reversible equations that allow convenient simulation without violating thermodynamic constraints.</p><p><strong>Results: </strong>We show how the irreversible Hill equation can be generalized to a reversible form, including effects of modifiers. The proposed equation leads to behaviour virtually indistinguishable from that predicted by a kinetic form of the Adair equation, despite the fact that the latter is a far more complicated equation. By contrast, a reversible form of the Monod-Wyman-Changeux equation that has sometimes been used leads to predictions for the effects of modifiers at high substrate concentration that differ qualitatively from those given by the Adair equation.</p>","PeriodicalId":77081,"journal":{"name":"Computer applications in the biosciences : CABIOS","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"1997-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1093/bioinformatics/13.4.377","citationCount":"140","resultStr":"{\"title\":\"The reversible Hill equation: how to incorporate cooperative enzymes into metabolic models.\",\"authors\":\"J H Hofmeyr,&nbsp;A Cornish-Bowden\",\"doi\":\"10.1093/bioinformatics/13.4.377\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Motivation: </strong>Realistic simulation of the kinetic properties of metabolic pathways requires rate equations to be expressed in reversible form, because substrate and product elasticities are drastically different in reversible and irreversible reactions. This presents no special problem for reactions that follow reversible Michaelis-Menten kinetics, but for enzymes showing cooperative kinetics the full reversible rate equations are extremely complicated, and anyway in virtually all cases the full equations are unknown because sufficiently complete kinetic studies have not been carried out. There is a need, therefore, for approximate reversible equations that allow convenient simulation without violating thermodynamic constraints.</p><p><strong>Results: </strong>We show how the irreversible Hill equation can be generalized to a reversible form, including effects of modifiers. The proposed equation leads to behaviour virtually indistinguishable from that predicted by a kinetic form of the Adair equation, despite the fact that the latter is a far more complicated equation. By contrast, a reversible form of the Monod-Wyman-Changeux equation that has sometimes been used leads to predictions for the effects of modifiers at high substrate concentration that differ qualitatively from those given by the Adair equation.</p>\",\"PeriodicalId\":77081,\"journal\":{\"name\":\"Computer applications in the biosciences : CABIOS\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"1997-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1093/bioinformatics/13.4.377\",\"citationCount\":\"140\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer applications in the biosciences : CABIOS\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1093/bioinformatics/13.4.377\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer applications in the biosciences : CABIOS","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1093/bioinformatics/13.4.377","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 140

摘要

动机:真实模拟代谢途径的动力学性质需要速率方程以可逆形式表示,因为在可逆反应和不可逆反应中,底物和产物的弹性是截然不同的。这对于遵循可逆Michaelis-Menten动力学的反应没有特别的问题,但对于表现出协同动力学的酶,完整的可逆速率方程是极其复杂的,而且无论如何,在几乎所有情况下,完整的方程都是未知的,因为还没有进行足够完整的动力学研究。因此,需要近似可逆方程,以便在不违反热力学约束的情况下方便地进行模拟。结果:我们展示了如何将不可逆的希尔方程推广到可逆形式,包括修饰符的影响。所提出的方程导致的行为实际上与Adair方程的动力学形式所预测的行为没有区别,尽管后者是一个复杂得多的方程。相比之下,有时使用的可逆形式的Monod-Wyman-Changeux方程会导致对高底物浓度下改进剂效果的预测,这与Adair方程给出的结果在质量上有所不同。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The reversible Hill equation: how to incorporate cooperative enzymes into metabolic models.

Motivation: Realistic simulation of the kinetic properties of metabolic pathways requires rate equations to be expressed in reversible form, because substrate and product elasticities are drastically different in reversible and irreversible reactions. This presents no special problem for reactions that follow reversible Michaelis-Menten kinetics, but for enzymes showing cooperative kinetics the full reversible rate equations are extremely complicated, and anyway in virtually all cases the full equations are unknown because sufficiently complete kinetic studies have not been carried out. There is a need, therefore, for approximate reversible equations that allow convenient simulation without violating thermodynamic constraints.

Results: We show how the irreversible Hill equation can be generalized to a reversible form, including effects of modifiers. The proposed equation leads to behaviour virtually indistinguishable from that predicted by a kinetic form of the Adair equation, despite the fact that the latter is a far more complicated equation. By contrast, a reversible form of the Monod-Wyman-Changeux equation that has sometimes been used leads to predictions for the effects of modifiers at high substrate concentration that differ qualitatively from those given by the Adair equation.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信