SCRIB是连接心脏栓塞性中风和阿尔茨海默病的共享转录组生物标志物候选物

IF 2.4 4区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Youdi Chen, Enjie Song, Susu Yu, Shu Wan, Wanning Zheng
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引用次数: 0

摘要

急性缺血性卒中是死亡和残疾的主要原因,卒中后认知障碍仍然是一个主要的临床挑战。心栓子性卒中(CES)通常与心房颤动相关,与认知能力下降密切相关。越来越多的证据表明,血管功能障碍导致血管性认知障碍和阿尔茨海默病(AD),但其共同的分子基础尚不清楚。本研究旨在确定连接CES和AD的共同分子特征和候选生物标志物。基因表达数据集来自基因表达Omnibus数据库。采用limma方法鉴定差异表达基因,采用加权基因共表达网络分析构建疾病相关基因模块。进行功能富集分析以探索共享通路。使用lasso、SVM-RFE和random forest三种机器学习算法对候选基因进行优先排序。通过受体操作特征分析、模态图建模、单基因基因集富集分析和外部验证来评估鉴定基因的潜在相关性。在CES和AD之间鉴定出7个重叠基因。其中,SCRIB被集成的特征选择工作流一致地选择,并且在两个内部数据集上都表现出中等的诊断性能。在独立的AD数据集和心房颤动相关的替代验证队列中观察到支持性验证。SCRIB可能是连接CES和AD的共享转录组生物标志物候选物。这些发现为脑血管病理和神经变性之间潜在的分子联系提供了初步的转录组学证据,但还需要进一步的机制和临床验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
SCRIB is a Shared Transcriptomic Biomarker Candidate Linking Cardioembolic Stroke and Alzheimer’s Disease

Acute ischemic stroke is a major cause of death and disability, and post-stroke cognitive impairment remains a major clinical challenge. Cardioembolic stroke (CES), often associated with atrial fibrillation, is closely linked to cognitive decline. Increasing evidence suggests that vascular dysfunction contributes to both vascular cognitive impairment and Alzheimer’s disease (AD), but the shared molecular basis remains unclear. This study aimed to identify shared molecular signatures and candidate biomarkers linking CES and AD. Gene expression datasets were obtained from the Gene Expression Omnibus database. Differentially expressed genes were identified using limma, and disease-related gene modules were constructed using weighted gene co-expression network analysis. Functional enrichment analyses were performed to explore shared pathways. Three machine learning algorithms—LASSO, SVM-RFE, and random forest—were used to prioritize candidate genes. Receiver operating characteristic analysis, nomogram modeling, single-gene gene set enrichment analysis, and external validation were performed to evaluate the potential relevance of the identified gene. Seven overlapping genes were identified between CES and AD. Among them, SCRIB was consistently selected by the integrated feature-selection workflow and showed moderate diagnostic performance in both internal datasets. Supportive validation was observed in an independent AD dataset and in an atrial fibrillation-related surrogate validation cohort. SCRIB may represent a shared transcriptomic biomarker candidate linking CES and AD. These findings provide preliminary transcriptomic evidence for a potential molecular link between cerebrovascular pathology and neurodegeneration, but further mechanistic and clinical validation is required.

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来源期刊
Journal of Molecular Neuroscience
Journal of Molecular Neuroscience 医学-神经科学
CiteScore
6.60
自引率
3.20%
发文量
142
审稿时长
1 months
期刊介绍: The Journal of Molecular Neuroscience is committed to the rapid publication of original findings that increase our understanding of the molecular structure, function, and development of the nervous system. The criteria for acceptance of manuscripts will be scientific excellence, originality, and relevance to the field of molecular neuroscience. Manuscripts with clinical relevance are especially encouraged since the journal seeks to provide a means for accelerating the progression of basic research findings toward clinical utilization. All experiments described in the Journal of Molecular Neuroscience that involve the use of animal or human subjects must have been approved by the appropriate institutional review committee and conform to accepted ethical standards.
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