Chenhui Qiu , Sarah Miller , Barathi Subramanian , Angela Ryu , Haiyu Zhang , George A. Fisher , Nigam H. Shah , John Mongan , Curtis Langlotz , Peter Poullos , Jeanne Shen
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Additionally, a scale-adaptive loss function, which introduces an adaptive coefficient and a scaling factor to adaptively measure the Intersection over Union (IoU) and center point distance for improving box regression performance, was designed to further improve detection performance. The proposed pipeline achieved a recall of 0.8092, precision of 0.8187, and F-1 score of 0.8139 for CRC detection on our in-house dataset at the patient level (inter-patient evaluation) and a recall of 0.9949, precision of 0.9894, and F-1 score of 0.9921 at the slice level (intra-patient evaluation). Validation on an external public dataset demonstrated that our pipeline, when trained on a patient-level in-house dataset, obtained a recall of 0.8283, precision of 0.8414, and F-1 score of 0.8348 and, when trained on a slice-level in-house dataset, achieved a recall of 0.6897, precision of 0.7888, and F-1 score of 0.7358, outperforming existing representative detection methods. 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引用次数: 0
摘要
结直肠癌(CRC)是全球第三大最常诊断的恶性肿瘤,也是癌症相关死亡的主要原因。本研究旨在探索门静脉期增强CT扫描中原发性结直肠癌的自动识别和定位方法,这是下游结直肠癌分期、预后和治疗计划的关键第一步。我们提出了一种基于深度学习的自动检测管道,使用YOLOv11作为基准架构。在YOLOv11主干中加入ResNet50模块,增强图像特征提取。此外,设计了一种尺度自适应损失函数,引入自适应系数和比例因子自适应测量交联(Intersection over Union, IoU)和中心点距离,以提高盒回归性能,进一步提高检测性能。所提出的管道在患者水平(患者间评估)的内部数据集中实现了CRC检测的召回率为0.8092,精度为0.8187,F-1评分为0.8139,在切片水平(患者内评估)的召回率为0.9949,精度为0.9894,F-1评分为0.9921。在外部公共数据集上的验证表明,当在患者级内部数据集上训练时,我们的管道获得了0.8283的召回率,0.8414的精度和0.8348的F-1分数,当在切片级内部数据集上训练时,实现了0.6897的召回率,0.7888的精度和0.7358的F-1分数,优于现有的代表性检测方法。在内部CT数据集上优越的CRC检测性能和在公共数据集上最先进的泛化性能(检测灵敏度(召回率)比下一个最接近的最先进方法提高31.97%),突出了我们的管道在CRC临床决策支持方面的潜在转化价值,条件是在更大的队列中进行验证。
A deep learning-based automated pipeline for colorectal cancer detection in contrast-enhanced CT images
Colorectal cancer (CRC) is the third most commonly diagnosed malignancy worldwide and a leading cause of cancer-related mortality. This study aims to investigate an automatic detection pipeline for identification and localization of the primary CRC in portal venous phase contrast-enhanced CT scans, which is a crucial first step for downstream CRC staging, prognostication, and treatment planning. We propose a deep learning-based automated detection pipeline using YOLOv11 as the baseline architecture. A ResNet50 module was incorporated into the YOLOv11 backbone to enhance image feature extraction. Additionally, a scale-adaptive loss function, which introduces an adaptive coefficient and a scaling factor to adaptively measure the Intersection over Union (IoU) and center point distance for improving box regression performance, was designed to further improve detection performance. The proposed pipeline achieved a recall of 0.8092, precision of 0.8187, and F-1 score of 0.8139 for CRC detection on our in-house dataset at the patient level (inter-patient evaluation) and a recall of 0.9949, precision of 0.9894, and F-1 score of 0.9921 at the slice level (intra-patient evaluation). Validation on an external public dataset demonstrated that our pipeline, when trained on a patient-level in-house dataset, obtained a recall of 0.8283, precision of 0.8414, and F-1 score of 0.8348 and, when trained on a slice-level in-house dataset, achieved a recall of 0.6897, precision of 0.7888, and F-1 score of 0.7358, outperforming existing representative detection methods. The superior CRC detection performance on the in-house CT dataset and state-of-the-art generalization performance on the public dataset (with a 31.97 %age point improvement in detection sensitivity (recall) over the next closest state-of-the-art method), highlight the potential translational value of our pipeline for CRC clinical decision support, conditional upon validation in larger cohorts.
期刊介绍:
The purpose of the journal Computerized Medical Imaging and Graphics is to act as a source for the exchange of research results concerning algorithmic advances, development, and application of digital imaging in disease detection, diagnosis, intervention, prevention, precision medicine, and population health. Included in the journal will be articles on novel computerized imaging or visualization techniques, including artificial intelligence and machine learning, augmented reality for surgical planning and guidance, big biomedical data visualization, computer-aided diagnosis, computerized-robotic surgery, image-guided therapy, imaging scanning and reconstruction, mobile and tele-imaging, radiomics, and imaging integration and modeling with other information relevant to digital health. The types of biomedical imaging include: magnetic resonance, computed tomography, ultrasound, nuclear medicine, X-ray, microwave, optical and multi-photon microscopy, video and sensory imaging, and the convergence of biomedical images with other non-imaging datasets.