GPR132在甲状腺乳头状癌中的预后意义:来自综合机器学习的见解及其在调节TPC-1细胞生长中的作用

IF 2.9 4区 医学 Q3 ENDOCRINOLOGY & METABOLISM
Jinghua Gao, Zihan Cai, Shoupeng Ding, Lanxin Ma, Jian Han, Yi-Yi Luo, Xueli Yang, Liqin Zhou, Wen Mei, Xiangfang Li, Lin Meng, Heng Luo
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引用次数: 0

摘要

目的:本研究利用机器学习和生物信息学方法分析数据,确定GPR132是甲状腺乳头状癌(PTC)可靠的潜在预后基因。实验阐明了GPR132通过调控细胞周期和凋亡机制抑制PTC肿瘤生长的潜在作用。这项研究为未来针对PTC的个性化治疗策略提供了重要的见解。方法:研究分析GSE191288 RNA-seq数据集,包括6个甲状腺癌肿瘤样本和1个相邻正常组织样本,以鉴定与肿瘤相关巨噬细胞(tumor-associated macrophages, tam)相关的基因。在进行了彻底的富集分析后,我们使用CellChat工具来研究信号通路。伪时间分析阐明了tam的分化状态,加权基因共表达网络分析(WGCNA)鉴定了M1巨噬细胞模块内的M1样tam相关基因。与GEO数据库的整合显示GPR132是一个关键的预后基因。通过细胞实验研究GPR132过表达对甲状腺乳头状癌(TPC-1)细胞增殖、迁移、凋亡和细胞周期进展的影响。结果:单细胞测序揭示了20个不同的细胞簇,分类为上皮细胞、基质细胞或免疫细胞,重点是tam。富集分析将tam表达基因与免疫反应调控联系起来。伪时间分析确定了tam的分化状态,而WGCNA将低丰度的M1巨噬细胞与良好的PTC预后联系起来。与GEO数据库的整合证实GPR132是一个关键的预后基因。细胞实验表明,GPR132过表达明显抑制TPC-1细胞的增殖和迁移,可能是通过G1期细胞周期阻滞和细胞凋亡增强。流式细胞术证实gpr132过表达细胞的早期和总凋亡率升高。结论:GPR132是影响PTC预后的关键基因,有证据表明其通过调节细胞周期和诱导细胞凋亡来抑制肿瘤。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Prognostic significance of GPR132 in papillary thyroid carcinoma: insights from integrated machine learning and its role in regulating TPC-1 cell growth.

Object: This study utilizes machine learning and bioinformatics methods to analyze data identifying GPR132 as a reliable potential prognostic gene for papillary thyroid carcinoma (PTC).The experiments elucidated potential role of GPR132 in inhibiting tumor growth in PTC by regulating the cell cycle and apoptotic mechanisms. This research provides significant insights for future personalized therapeutic strategies aimed at targeting PTC.

Methods: The study analyzed the GSE191288 RNA-seq dataset, which included six thyroid cancer tumor samples and one adjacent normal tissue sample, to identify genes associated with tumor-associated macrophages (TAMs). After conducting a thorough enrichment analysis, we used the CellChat tool to investigate the signaling pathways.Pseudotemporal analysis elucidated the differentiation status of TAMs, and weighted gene co-expression network analysis(WGCNA) identified M1-like TAM-related genes within the M1 macrophage module. Integration with the GEO database revealed that GPR132 is a key prognostic gene. The effects of GPR132 overexpression on the proliferation, migration, apoptosis, and cell cycle progression of thyroid papillary carcinoma (TPC-1) cells were evaluated through cell-based experiments.

Results: Single-cell sequencing revealed 20 distinct cell clusters, categorized as epithelial, stromal, or immune cells, with a focus on TAMs.Enrichment analysis associated TAM-expressed genes with immune response regulation. Pseudotime analysis identified TAMs differentiation states, while WGCNA linked a low abundance of M1 macrophages to favorable PTC prognosis. Integration with the GEO database confirmed GPR132 as a key prognostic gene. Cellular experiments showed that GPR132 overexpression markedly inhibited TPC-1 cell proliferation and migration, likely through G1 phase cell cycle arrest and enhanced apoptosis. Flow cytometry confirmed elevated early and total apoptosis rates in GPR132-overexpressing cells.

Conclusion: GPR132 was identified as a critical prognostic gene for PTC, with evidence suggesting its role in tumor suppression via cell cycle modulation and apoptosis induction.

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来源期刊
Discover. Oncology
Discover. Oncology Medicine-Endocrinology, Diabetes and Metabolism
CiteScore
2.40
自引率
9.10%
发文量
122
审稿时长
5 weeks
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