TorchANI 2.0:一个可扩展的高性能库,用于设计、训练和使用nn - ip。

IF 5.3 2区 化学 Q1 CHEMISTRY, MEDICINAL
Ignacio Pickering, Jinze Xue, Kate Huddleston, Nicholas Terrel, Adrian E Roitberg
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引用次数: 0

摘要

在这项工作中,我们介绍了TorchANI 2.0,这是一个免费和开源的TorchANI软件包的显著改进版本,用于ANI (ANAKIN-ME)深度学习模型的训练和评估。《TorchANI 2.0》建立在其前身的基础上,同时解决了其局限性并引入了新功能。这些变化极大地增强了它作为一个框架的可扩展性、性能和适用性,为分子动力学应用程序开发模型做好了准备。这些改进包括引入模块化系统,为模型添加任意成对势,cuda加速优化,以更快和更高效地计算局部原子特征,以及批处理系统,以提高网络集成的性能等。我们的基准测试表明,与以前的版本相比,TorchANI 2.0在训练和推理方面都实现了显著的加速,并且库的增强允许用户训练物理约束模型,从而更好地代表化学系统的重要品质。我们通过引入三个新的ANI模型来证明这一点,这些模型包含了这些特征并评估了它们的功能。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
TorchANI 2.0: An Extensible, High-Performance Library for the Design, Training, and Use of NN-IPs.

In this work, we introduce TorchANI 2.0, a significantly improved version of the free and open source TorchANI software package for training and evaluation of ANI (ANAKIN-ME) deep learning models. TorchANI 2.0 builds upon the foundation of its predecessor, while addressing its limitations and introducing new features. These changes greatly enhance its extensibility, performance, and suitability as a framework for developing models ready for molecular dynamics applications. These improvements include the introduction of a modular system to add arbitrary pairwise potentials to models, CUDA-accelerated optimization for faster and more memory-efficient calculation of local atomic features, and a batched system for better performance of network ensembles, among others. Our benchmarks demonstrate that TorchANI 2.0 achieves significant speedup over previous versions in both training and inference, and the library enhancements allow users to train physically constrained models that better represent important qualities of chemical systems. We demonstrate this by introducing three new ANI models that incorporate these features and evaluating their capabilities.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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