{"title":"苯胺衍生物希夫碱的体外抗氧化(分光光度/电化学)和酶活性:实验和计算评价。","authors":"Zakia Messasma , Djouhra Aggoun , Mostefa Hani , Leila Ailane , Nada Hiba Boukoucha , Chawki Bensouici , Yasmina Ouennoughi","doi":"10.1016/j.compbiolchem.2025.108699","DOIUrl":null,"url":null,"abstract":"<div><div>Hereby, the <em>in vitro</em> biological, electrochemical, computational, molecular docking, and <em>in silico</em> ADMET properties of the H<sub>2</sub>L ligand have been investigated. The antioxidant potential was evaluated using spectrochemical as well as electrochemical assays. H<sub>2</sub>L was found to exhibit intriguing antioxidant capacities in almost several <em>in vitro</em> applications of tests such as DPPH, ABTS, GOR, PRAC, reducing power, CUPRAC, phenanthroline, and the optical properties of silver nanoparticles (SNPs). The H<sub>2</sub>L showed scavenging ability against electrochemically generated superoxide anion radical (O<sub>2</sub><sup><strong>·−</strong></sup>) by electrochemical reduction of O<sub>2</sub> quantitated in terms of I %. Furthermore, H<sub>2</sub>L was tested for some enzymatic inhibition activities (cholinesterase, tyrosinase, urease, and α-amylase), displaying higher inhibition toward these selected enzymes. A theoretical study was carried out by the density functional (DFT) method (gas phase/B3LYP functional associated with the 6–31G (d,p) basis) for thermodynamic behavior, stability, and reactivity prediction. Then, a docking study was performed using AutoDock and MG-tools programs with the same selected proteins with PDB IDs as follows: 4EY7, 4BDS, 2Y9X, 3LA4, and 2QV4, respectively, to visualize the best docked pose and favorable ligand-protein binding interactions. The <em>in silico</em> results revealed that H<sub>2</sub>L exhibited stronger tyrosinase inhibitory activity than kojic acid. Thus, these results showed good agreement with the experimental data obtained from the enzyme-inhibiting assay. Finally, several important physicochemical descriptors were examined through <em>in silico</em> ADMET analysis and additionally processed through <em>in vitro</em> PAMPA-BBB permeability assay. Finally, to identify the optimal combinations with the antioxidant responses and based on the results obtained from the response surface methodology (RSM), optimization analyses were also carried out.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"120 ","pages":"Article 108699"},"PeriodicalIF":3.1000,"publicationDate":"2025-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"In vitro antioxidant (spectrophotometric/electrochemical) and enzymatic activities of aniline derivative Schiff base: Experimental and computational assessment\",\"authors\":\"Zakia Messasma , Djouhra Aggoun , Mostefa Hani , Leila Ailane , Nada Hiba Boukoucha , Chawki Bensouici , Yasmina Ouennoughi\",\"doi\":\"10.1016/j.compbiolchem.2025.108699\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Hereby, the <em>in vitro</em> biological, electrochemical, computational, molecular docking, and <em>in silico</em> ADMET properties of the H<sub>2</sub>L ligand have been investigated. The antioxidant potential was evaluated using spectrochemical as well as electrochemical assays. H<sub>2</sub>L was found to exhibit intriguing antioxidant capacities in almost several <em>in vitro</em> applications of tests such as DPPH, ABTS, GOR, PRAC, reducing power, CUPRAC, phenanthroline, and the optical properties of silver nanoparticles (SNPs). The H<sub>2</sub>L showed scavenging ability against electrochemically generated superoxide anion radical (O<sub>2</sub><sup><strong>·−</strong></sup>) by electrochemical reduction of O<sub>2</sub> quantitated in terms of I %. Furthermore, H<sub>2</sub>L was tested for some enzymatic inhibition activities (cholinesterase, tyrosinase, urease, and α-amylase), displaying higher inhibition toward these selected enzymes. A theoretical study was carried out by the density functional (DFT) method (gas phase/B3LYP functional associated with the 6–31G (d,p) basis) for thermodynamic behavior, stability, and reactivity prediction. Then, a docking study was performed using AutoDock and MG-tools programs with the same selected proteins with PDB IDs as follows: 4EY7, 4BDS, 2Y9X, 3LA4, and 2QV4, respectively, to visualize the best docked pose and favorable ligand-protein binding interactions. The <em>in silico</em> results revealed that H<sub>2</sub>L exhibited stronger tyrosinase inhibitory activity than kojic acid. Thus, these results showed good agreement with the experimental data obtained from the enzyme-inhibiting assay. Finally, several important physicochemical descriptors were examined through <em>in silico</em> ADMET analysis and additionally processed through <em>in vitro</em> PAMPA-BBB permeability assay. Finally, to identify the optimal combinations with the antioxidant responses and based on the results obtained from the response surface methodology (RSM), optimization analyses were also carried out.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"120 \",\"pages\":\"Article 108699\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-09-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927125003603\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927125003603","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
In vitro antioxidant (spectrophotometric/electrochemical) and enzymatic activities of aniline derivative Schiff base: Experimental and computational assessment
Hereby, the in vitro biological, electrochemical, computational, molecular docking, and in silico ADMET properties of the H2L ligand have been investigated. The antioxidant potential was evaluated using spectrochemical as well as electrochemical assays. H2L was found to exhibit intriguing antioxidant capacities in almost several in vitro applications of tests such as DPPH, ABTS, GOR, PRAC, reducing power, CUPRAC, phenanthroline, and the optical properties of silver nanoparticles (SNPs). The H2L showed scavenging ability against electrochemically generated superoxide anion radical (O2·−) by electrochemical reduction of O2 quantitated in terms of I %. Furthermore, H2L was tested for some enzymatic inhibition activities (cholinesterase, tyrosinase, urease, and α-amylase), displaying higher inhibition toward these selected enzymes. A theoretical study was carried out by the density functional (DFT) method (gas phase/B3LYP functional associated with the 6–31G (d,p) basis) for thermodynamic behavior, stability, and reactivity prediction. Then, a docking study was performed using AutoDock and MG-tools programs with the same selected proteins with PDB IDs as follows: 4EY7, 4BDS, 2Y9X, 3LA4, and 2QV4, respectively, to visualize the best docked pose and favorable ligand-protein binding interactions. The in silico results revealed that H2L exhibited stronger tyrosinase inhibitory activity than kojic acid. Thus, these results showed good agreement with the experimental data obtained from the enzyme-inhibiting assay. Finally, several important physicochemical descriptors were examined through in silico ADMET analysis and additionally processed through in vitro PAMPA-BBB permeability assay. Finally, to identify the optimal combinations with the antioxidant responses and based on the results obtained from the response surface methodology (RSM), optimization analyses were also carried out.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.