PGK1:通过成纤维细胞介导的途径连接肌肉减少症和骨质疏松症的共同生物标志物和治疗靶点。

IF 1.9 4区 生物学 Q4 CELL BIOLOGY
Kun Zhang, Hailong Li, Xinhong Chen, Ping Tang, Meng Wang, Chunting Yang, Rong Su, Xiaqin Gao, Fan Zhang, Juan Han
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引用次数: 0

摘要

骨骼肌减少症和骨质疏松症具有共同的病理生理联系,但其共同发生的机制尚不清楚。本研究旨在利用生物信息学的方法鉴定它们共同发育的分子介质。骨骼肌减少症(GSE56815)和骨质疏松症(GSE9103)的数据集从GEO检索。差异表达基因(DEGs)通过edgeR和limma分析。基因本体(GO)、京都基因和基因组百科全书(KEGG)和加权基因共表达网络分析(WGCNA)确定了共享途径和枢纽基因。利用STRING和Cytoscape构建蛋白-蛋白相互作用(PPI)网络。我们在独立的数据集(GSE13850、GSE8479)中验证了枢纽基因,并通过ROC曲线进行了评估。免疫浸润、单细胞分析及药物预测。我们确定了134个共同的deg(30个上调,104个下调)。WGCNA和PPI分析共发现14个枢纽基因(APOE、CDK2、PGK1、HRAS、RUNX2等),ROC-AUC均为0.6。PGK1在两种疾病中均持续下调,并与21种mirna和6种转录因子(HSF1、TP53、JUN等)相关。单细胞分析发现PGK1主要存在于骨骼肌成纤维细胞中。DrugBank确定拉米夫定是一种潜在的靶向pgk1治疗药物。PGK1在骨骼肌减少症和骨质疏松症中作为中心下调基因出现,在成纤维细胞中富集,并由拉米夫定调节。这些发现强调了PGK1作为一个共同的诊断和治疗靶点,为肌肉骨骼串扰提供了见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

PGK1: A Common Biomarker and Therapeutic Target Linking Sarcopenia and Osteoporosis Through Fibroblast-Mediated Pathways

PGK1: A Common Biomarker and Therapeutic Target Linking Sarcopenia and Osteoporosis Through Fibroblast-Mediated Pathways

Sarcopenia and osteoporosis share pathophysiological links, but their co-occurrence mechanisms remain unclear. This study aimed to identify molecular mediators of their co-development using bioinformatics. Datasets for sarcopenia (GSE56815) and osteoporosis (GSE9103) were retrieved from GEO. Differentially expressed genes (DEGs) were analysed via edgeR and limma. Gene ontology (GO), Kyoto encyclopaedia of genes and genomes (KEGG) and weighted gene co-expression network analysis (WGCNA) identified shared pathways and hub genes. Protein–protein interaction (PPI) networks were constructed using STRING and Cytoscape. We validated hub genes in independent datasets (GSE13850, GSE8479) and assessed via ROC curves. Immune infiltration, single-cell analysis and drug prediction were performed. We identified 134 common DEGs (30 upregulated, 104 downregulated). WGCNA and PPI analysis revealed 14 hub genes (APOE, CDK2, PGK1, HRAS, RUNX2 etc.), all with ROC-AUC > 0.6. PGK1 was consistently downregulated in both diseases and linked to 21 miRNAs and six transcription factors (HSF1, TP53, JUN etc.). Single-cell analysis localised PGK1 predominantly in skeletal muscle fibroblasts. DrugBank identified lamivudine as a potential PGK1-targeting therapeutic. PGK1 emerged as a central downregulated gene in sarcopenia and osteoporosis, enriched in fibroblasts and modulated by lamivudine. These findings highlight PGK1 as a shared diagnostic and therapeutic target, offering insights into musculoskeletal crosstalk.

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来源期刊
IET Systems Biology
IET Systems Biology 生物-数学与计算生物学
CiteScore
4.20
自引率
4.30%
发文量
17
审稿时长
>12 weeks
期刊介绍: IET Systems Biology covers intra- and inter-cellular dynamics, using systems- and signal-oriented approaches. Papers that analyse genomic data in order to identify variables and basic relationships between them are considered if the results provide a basis for mathematical modelling and simulation of cellular dynamics. Manuscripts on molecular and cell biological studies are encouraged if the aim is a systems approach to dynamic interactions within and between cells. The scope includes the following topics: Genomics, transcriptomics, proteomics, metabolomics, cells, tissue and the physiome; molecular and cellular interaction, gene, cell and protein function; networks and pathways; metabolism and cell signalling; dynamics, regulation and control; systems, signals, and information; experimental data analysis; mathematical modelling, simulation and theoretical analysis; biological modelling, simulation, prediction and control; methodologies, databases, tools and algorithms for modelling and simulation; modelling, analysis and control of biological networks; synthetic biology and bioengineering based on systems biology.
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