隐式神经图像场用于生物显微镜图像压缩。

IF 18.3 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Gaole Dai, Rongyu Zhang, Qingpo Wuwu, Cheng-Ching Tseng, Yu Zhou, Shaokang Wang, Siyuan Qian, Ming Lu, Ali Ata Tuz, Matthias Gunzer, Tiejun Huang, Jianxu Chen, Shanghang Zhang
{"title":"隐式神经图像场用于生物显微镜图像压缩。","authors":"Gaole Dai, Rongyu Zhang, Qingpo Wuwu, Cheng-Ching Tseng, Yu Zhou, Shaokang Wang, Siyuan Qian, Ming Lu, Ali Ata Tuz, Matthias Gunzer, Tiejun Huang, Jianxu Chen, Shanghang Zhang","doi":"10.1038/s43588-025-00889-4","DOIUrl":null,"url":null,"abstract":"<p><p>The rapid pace of innovation in biological microscopy has produced increasingly large images, putting pressure on data storage and impeding efficient data sharing, management and visualization. This trend necessitates new, efficient compression solutions, as traditional coder-decoder methods often struggle with the diversity of bioimages, leading to suboptimal results. Here we show an adaptive compression workflow based on implicit neural representation that addresses these challenges. Our approach enables application-specific compression, supports images of varying dimensionality and allows arbitrary pixel-wise decompression. On a wide range of real-world microscopy images, we demonstrate that our workflow achieves high, controllable compression ratios while preserving the critical details necessary for downstream scientific analysis.</p>","PeriodicalId":74246,"journal":{"name":"Nature computational science","volume":" ","pages":""},"PeriodicalIF":18.3000,"publicationDate":"2025-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Implicit neural image field for biological microscopy image compression.\",\"authors\":\"Gaole Dai, Rongyu Zhang, Qingpo Wuwu, Cheng-Ching Tseng, Yu Zhou, Shaokang Wang, Siyuan Qian, Ming Lu, Ali Ata Tuz, Matthias Gunzer, Tiejun Huang, Jianxu Chen, Shanghang Zhang\",\"doi\":\"10.1038/s43588-025-00889-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The rapid pace of innovation in biological microscopy has produced increasingly large images, putting pressure on data storage and impeding efficient data sharing, management and visualization. This trend necessitates new, efficient compression solutions, as traditional coder-decoder methods often struggle with the diversity of bioimages, leading to suboptimal results. Here we show an adaptive compression workflow based on implicit neural representation that addresses these challenges. Our approach enables application-specific compression, supports images of varying dimensionality and allows arbitrary pixel-wise decompression. On a wide range of real-world microscopy images, we demonstrate that our workflow achieves high, controllable compression ratios while preserving the critical details necessary for downstream scientific analysis.</p>\",\"PeriodicalId\":74246,\"journal\":{\"name\":\"Nature computational science\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":18.3000,\"publicationDate\":\"2025-10-10\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Nature computational science\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1038/s43588-025-00889-4\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Nature computational science","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1038/s43588-025-00889-4","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0

摘要

生物显微镜技术的快速创新产生了越来越大的图像,这给数据存储带来了压力,阻碍了有效的数据共享、管理和可视化。这种趋势需要新的、高效的压缩解决方案,因为传统的编解码器方法经常与生物图像的多样性作斗争,导致次优结果。在这里,我们展示了一个基于隐式神经表示的自适应压缩工作流,以解决这些挑战。我们的方法支持特定于应用程序的压缩,支持不同维度的图像,并允许任意像素方向的解压缩。在广泛的现实世界的显微镜图像中,我们证明了我们的工作流程实现了高,可控的压缩比,同时保留了下游科学分析所需的关键细节。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Implicit neural image field for biological microscopy image compression.

The rapid pace of innovation in biological microscopy has produced increasingly large images, putting pressure on data storage and impeding efficient data sharing, management and visualization. This trend necessitates new, efficient compression solutions, as traditional coder-decoder methods often struggle with the diversity of bioimages, leading to suboptimal results. Here we show an adaptive compression workflow based on implicit neural representation that addresses these challenges. Our approach enables application-specific compression, supports images of varying dimensionality and allows arbitrary pixel-wise decompression. On a wide range of real-world microscopy images, we demonstrate that our workflow achieves high, controllable compression ratios while preserving the critical details necessary for downstream scientific analysis.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
11.70
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信