神经紧张素和溶菌酶在黄金上软着陆的分子动力学:分子弹丸速度、入射角和温度的影响。

IF 2.7 2区 化学 Q2 BIOCHEMICAL RESEARCH METHODS
Samuel Bertolini, Arnaud Delcorte
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引用次数: 0

摘要

iBEAM技术采用大氩气簇离子束,在真空中将完整的大分子从靶物转移到收集器表面,如溶菌酶和葡萄糖氧化酶,同时保持其生物活性。我们的分子动力学(MD)模拟描述了完整的溶菌酶,葡萄糖氧化酶,甚至溶菌酶簇的解吸,包括多达五个单元,从而表明重生物分子及其分子簇的潜在软解吸。反过来,假设它们的软解吸作用,本文利用反应MD模拟了含有5个神经紧张素分子或一个溶菌酶分子的单个神经紧张素簇落在金底物上的过程。系统地探索了参数空间,包括入射角、碰撞速度和簇/蛋白质温度。我们的模拟结果表明,碎裂随速度、向法向碰撞角和温度的增加而增加。碰撞后的后向散射现象主要受碰撞速度的影响,而受碰撞角度和温度的影响较小。尽管如此,所有的分子弹丸参数都在塑造在金上的着陆过程中发挥作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Molecular Dynamics of Neurotensin and Lysozyme Soft-Landing on Gold: Influence of the Molecular Projectile Velocity, Incidence Angle and Temperature.

Employing large argon cluster ion beams, the iBEAM technique has exhibited aptitude in transferring large intact biomolecules from a target to a collector surface in the vacuum, e.g., lysozyme and glucose oxidase, while preserving their bioactivity. Our molecular dynamics (MD) simulations described the desorption of intact lysozymes, glucose oxidase, and even lysozyme clusters comprising up to five units, thereby suggesting the potential soft desorption of heavy biomolecules and their molecular clusters. In turn, assuming their soft desorption, the present contribution models the landing of a single neurotensin cluster containing 5 neurotensin molecules or one lysozyme molecule onto a gold substrate using reactive MD. The parameter space, including incidence angle, collision velocity, and cluster/protein temperature, is systematically explored. Our simulations show that fragmentation increases with the rise of the velocity, collision angle toward the normal, and temperature. Also, after the collision, the backscattering phenomenon is predominantly influenced by varying the collision velocity but is less affected by the collision angle and temperature. Nonetheless, all molecular projectile parameters play a role in shaping the landing process on gold.

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来源期刊
CiteScore
5.50
自引率
9.40%
发文量
257
审稿时长
1 months
期刊介绍: The Journal of the American Society for Mass Spectrometry presents research papers covering all aspects of mass spectrometry, incorporating coverage of fields of scientific inquiry in which mass spectrometry can play a role. Comprehensive in scope, the journal publishes papers on both fundamentals and applications of mass spectrometry. Fundamental subjects include instrumentation principles, design, and demonstration, structures and chemical properties of gas-phase ions, studies of thermodynamic properties, ion spectroscopy, chemical kinetics, mechanisms of ionization, theories of ion fragmentation, cluster ions, and potential energy surfaces. In addition to full papers, the journal offers Communications, Application Notes, and Accounts and Perspectives
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