Grigory Yu. Zhigulin, Marina A. Katkova, Sergey Yu. Ketkov
{"title":"基于含3-羟基-4-吡啶酮的五铜(II) 12-MC-4金属大环的超分子组装计算预测","authors":"Grigory Yu. Zhigulin, Marina A. Katkova, Sergey Yu. Ketkov","doi":"10.1016/j.comptc.2025.115523","DOIUrl":null,"url":null,"abstract":"<div><div>DFT calculations predict an association of the copper(II)-containing β-alaninehydroxamic 12-metallacrown-4 (12-MC-4) and cuprate derivatives of the 3-hydroxy-4-pyridinones (3,4-HPs) in molecular ensembles. Noncovalent interactions forming the ensembles are analyzed with QTAIM and RDG approaches. Among the crucial contacts revealed are hydrogen bonds of the NH<sub>2</sub>⋯OC(O) type and apical Cu<img>O interactions. Differences between the coordination environments of the central Cu<sup>2+</sup> ion in 12-MC-4 and cuprates are displayed by ELF. Possible patterns of an ensemble arrangement in a crystal phase are suggested. On the basis of spatial structures formed by the NH<sub>2</sub>⋯OC(O) and Cu<img>O interactions and computed dipole moments, the patterns are predicted to be of 1D and 2D packing. Energy changes on formation of corresponding molecular ensembles from separate 12-MC-4 and cuprate species in the polar medium of methanol are 0.7 and −19.2 kcal/mol by PBE0/DGDZVP. The PBE0 results are compared with TPSSH calculations employing the same basis set.</div></div>","PeriodicalId":284,"journal":{"name":"Computational and Theoretical Chemistry","volume":"1254 ","pages":"Article 115523"},"PeriodicalIF":3.0000,"publicationDate":"2025-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Computational prediction of supramolecular assembly based on pentacopper(II) 12-MC-4 metallamacrocycles with 3-hydroxy-4-pyridinone moieties\",\"authors\":\"Grigory Yu. Zhigulin, Marina A. Katkova, Sergey Yu. Ketkov\",\"doi\":\"10.1016/j.comptc.2025.115523\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>DFT calculations predict an association of the copper(II)-containing β-alaninehydroxamic 12-metallacrown-4 (12-MC-4) and cuprate derivatives of the 3-hydroxy-4-pyridinones (3,4-HPs) in molecular ensembles. Noncovalent interactions forming the ensembles are analyzed with QTAIM and RDG approaches. Among the crucial contacts revealed are hydrogen bonds of the NH<sub>2</sub>⋯OC(O) type and apical Cu<img>O interactions. Differences between the coordination environments of the central Cu<sup>2+</sup> ion in 12-MC-4 and cuprates are displayed by ELF. Possible patterns of an ensemble arrangement in a crystal phase are suggested. On the basis of spatial structures formed by the NH<sub>2</sub>⋯OC(O) and Cu<img>O interactions and computed dipole moments, the patterns are predicted to be of 1D and 2D packing. Energy changes on formation of corresponding molecular ensembles from separate 12-MC-4 and cuprate species in the polar medium of methanol are 0.7 and −19.2 kcal/mol by PBE0/DGDZVP. The PBE0 results are compared with TPSSH calculations employing the same basis set.</div></div>\",\"PeriodicalId\":284,\"journal\":{\"name\":\"Computational and Theoretical Chemistry\",\"volume\":\"1254 \",\"pages\":\"Article 115523\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-10-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational and Theoretical Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2210271X25004591\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational and Theoretical Chemistry","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2210271X25004591","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Computational prediction of supramolecular assembly based on pentacopper(II) 12-MC-4 metallamacrocycles with 3-hydroxy-4-pyridinone moieties
DFT calculations predict an association of the copper(II)-containing β-alaninehydroxamic 12-metallacrown-4 (12-MC-4) and cuprate derivatives of the 3-hydroxy-4-pyridinones (3,4-HPs) in molecular ensembles. Noncovalent interactions forming the ensembles are analyzed with QTAIM and RDG approaches. Among the crucial contacts revealed are hydrogen bonds of the NH2⋯OC(O) type and apical CuO interactions. Differences between the coordination environments of the central Cu2+ ion in 12-MC-4 and cuprates are displayed by ELF. Possible patterns of an ensemble arrangement in a crystal phase are suggested. On the basis of spatial structures formed by the NH2⋯OC(O) and CuO interactions and computed dipole moments, the patterns are predicted to be of 1D and 2D packing. Energy changes on formation of corresponding molecular ensembles from separate 12-MC-4 and cuprate species in the polar medium of methanol are 0.7 and −19.2 kcal/mol by PBE0/DGDZVP. The PBE0 results are compared with TPSSH calculations employing the same basis set.
期刊介绍:
Computational and Theoretical Chemistry publishes high quality, original reports of significance in computational and theoretical chemistry including those that deal with problems of structure, properties, energetics, weak interactions, reaction mechanisms, catalysis, and reaction rates involving atoms, molecules, clusters, surfaces, and bulk matter.