B-N体系的分子模拟:硼球烯-吡啶杂化物的相互作用和性质

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ling Pei, Li-Juan Zhang, Hai-Bo Yao
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引用次数: 0

摘要

硼球烯(B₄₀)是一种全硼富勒烯类似物,在其硼位点表现出刘易斯酸性,而吡啶是一种常见的有机配体,充当刘易斯碱。尽管对B₄0与金属和小无机分子的相互作用进行了广泛的研究,但与吡啶等有机配体功能化以形成新型杂化材料(如硼球烯-有机框架(BOFs))的潜力仍未得到充分开发。本研究探讨了B₄₀-吡啶(B₄₀-Py)配合物的结构、稳定性和相互作用性质。结构搜索确定了18种异构体,详细分析表明,最稳定的配合物是通过直接的B-N相互作用形成的。多重计算分析证明,B-N键具有共价和离子的协同组合特性。最稳定的同分异构体(涉及B(4)位点)为设计基于硼圈烯的B - n功能分子和bof提供了重要的见解。方法密度泛函理论(DFT)计算采用高斯分布。初始结构搜索采用了Molclus程序和xTB预优化。在M062X/6-311G(d)、PBE0-D3/6-311G(d)和B3LYP-D3/6-311G(d)水平上对异构体进行几何优化和频率计算(确认没有虚频率),并结合grime 's D3色散校正。利用平衡法对基集叠加误差(BSSE)进行校正。对6种最低能异构体的后续分析包括:静电势(ESP)映射、分子原子量子理论(AIM)分析、电荷密度差分析以及基于Hirshfeld划分(IGMH)和相互作用区域指示器(IRI)的独立梯度模型的非共价相互作用可视化。这些分析使用了Multiwfn 3.8软件包。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Molecular simulation of B-N systems: insights into the interactions and properties of borospherene–pyridine hybrids

Context

Borospherene (B₄₀), an all-boron fullerene analogue, exhibits Lewis acidity at its boron sites, while pyridine, a common organic ligand, acts as a Lewis base. Despite extensive research on B₄₀ interactions with metals and small inorganic molecules, the potential for functionalization with organic ligands like pyridine to form novel hybrid materials, such as borospherene–organic frameworks (BOFs), remains largely unexplored. This study investigates the structure, stability, and nature of interactions in B₄₀-pyridine (B₄₀-Py) complexes. Structural searches identified 18 isomers, with detailed analysis revealing that the most stable complexes form through direct B–N interactions. The B–N bonding exhibits a synergistic combination of covalent and ionic character, as evidenced by multiple computational analyses. The most stable isomer (involving B(4) site) provides crucial insights for designing B–N functional molecules and BOFs based on borospherene.

Methods

Density functional theory (DFT) calculations were performed using Gaussian 16. Initial structural searches employed the Molclus program coupled with xTB pre-optimization. Geometry optimizations and frequency calculations (confirming no imaginary frequencies) for isomers were carried out at the M062X/6-311G(d), PBE0-D3/6-311G(d), and B3LYP-D3/6-311G(d) levels, incorporating Grimme's D3 dispersion correction. Basis-set superposition error (BSSE) corrections were applied using the counterpoise method. Subsequent analyses for the six lowest-energy isomers included: electrostatic potential (ESP) mapping, quantum theory of atoms in molecules (AIM) analysis, charge-density difference analysis, and visualization of non-covalent interactions using the independent gradient model based on Hirshfeld partition (IGMH) and the interaction region indicator (IRI). These analyses utilized the Multiwfn 3.8 software package.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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