Cedric J Gommes, Olga Matsarskaia, Julio M Pusterla, Igor Graf von Westarp, Baohu Wu, Orsolya Czakkel, Andreas M Stadler
{"title":"含蛋白样内含物膜的小角散射分析模型。","authors":"Cedric J Gommes, Olga Matsarskaia, Julio M Pusterla, Igor Graf von Westarp, Baohu Wu, Orsolya Czakkel, Andreas M Stadler","doi":"10.1107/S1600576725007277","DOIUrl":null,"url":null,"abstract":"<p><p>Proteins are ubiquitous in biological membranes and have a significant impact on their scattering properties. In this contribution, we introduce a general mathematical construction to add proteins to any pre-existing membrane model and to calculate the resulting elastic and/or inelastic scattering cross section. The model is a low-resolution one, which describes the proteins as made up of regions of homogeneous scattering length density that extend through an arbitrary fraction of the membrane and possibly protrude out of it. In this construction, the protein characteristics that are relevant to scattering are their space and time correlation functions in the two-dimensional plane of the membrane. The results are particularized to a static bilayer model and to a Gaussian model of a fluctuating membrane. The models are then applied to the joint analysis of small-angle neutron and X-ray scattering of red blood cell membranes, of which transmembrane proteins constitute 25% of the volume, and to neutron spin-echo data measured on the same systems.</p>","PeriodicalId":14950,"journal":{"name":"Journal of Applied Crystallography","volume":"58 Pt 5","pages":"1571-1581"},"PeriodicalIF":2.8000,"publicationDate":"2025-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12502873/pdf/","citationCount":"0","resultStr":"{\"title\":\"Model for small-angle scattering analysis of membranes with protein-like inclusions.\",\"authors\":\"Cedric J Gommes, Olga Matsarskaia, Julio M Pusterla, Igor Graf von Westarp, Baohu Wu, Orsolya Czakkel, Andreas M Stadler\",\"doi\":\"10.1107/S1600576725007277\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Proteins are ubiquitous in biological membranes and have a significant impact on their scattering properties. In this contribution, we introduce a general mathematical construction to add proteins to any pre-existing membrane model and to calculate the resulting elastic and/or inelastic scattering cross section. The model is a low-resolution one, which describes the proteins as made up of regions of homogeneous scattering length density that extend through an arbitrary fraction of the membrane and possibly protrude out of it. In this construction, the protein characteristics that are relevant to scattering are their space and time correlation functions in the two-dimensional plane of the membrane. The results are particularized to a static bilayer model and to a Gaussian model of a fluctuating membrane. The models are then applied to the joint analysis of small-angle neutron and X-ray scattering of red blood cell membranes, of which transmembrane proteins constitute 25% of the volume, and to neutron spin-echo data measured on the same systems.</p>\",\"PeriodicalId\":14950,\"journal\":{\"name\":\"Journal of Applied Crystallography\",\"volume\":\"58 Pt 5\",\"pages\":\"1571-1581\"},\"PeriodicalIF\":2.8000,\"publicationDate\":\"2025-09-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12502873/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Applied Crystallography\",\"FirstCategoryId\":\"88\",\"ListUrlMain\":\"https://doi.org/10.1107/S1600576725007277\",\"RegionNum\":3,\"RegionCategory\":\"材料科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/10/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Applied Crystallography","FirstCategoryId":"88","ListUrlMain":"https://doi.org/10.1107/S1600576725007277","RegionNum":3,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/10/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
Model for small-angle scattering analysis of membranes with protein-like inclusions.
Proteins are ubiquitous in biological membranes and have a significant impact on their scattering properties. In this contribution, we introduce a general mathematical construction to add proteins to any pre-existing membrane model and to calculate the resulting elastic and/or inelastic scattering cross section. The model is a low-resolution one, which describes the proteins as made up of regions of homogeneous scattering length density that extend through an arbitrary fraction of the membrane and possibly protrude out of it. In this construction, the protein characteristics that are relevant to scattering are their space and time correlation functions in the two-dimensional plane of the membrane. The results are particularized to a static bilayer model and to a Gaussian model of a fluctuating membrane. The models are then applied to the joint analysis of small-angle neutron and X-ray scattering of red blood cell membranes, of which transmembrane proteins constitute 25% of the volume, and to neutron spin-echo data measured on the same systems.
期刊介绍:
Many research topics in condensed matter research, materials science and the life sciences make use of crystallographic methods to study crystalline and non-crystalline matter with neutrons, X-rays and electrons. Articles published in the Journal of Applied Crystallography focus on these methods and their use in identifying structural and diffusion-controlled phase transformations, structure-property relationships, structural changes of defects, interfaces and surfaces, etc. Developments of instrumentation and crystallographic apparatus, theory and interpretation, numerical analysis and other related subjects are also covered. The journal is the primary place where crystallographic computer program information is published.