Xuehan Lu, Xiao Tan, Eun Ju Kim, Xinnan Jin, Meg L Donovan, Jazmina L Gonzalez Cruz, Zherui Xiong, Maria Reyes Becerra de Los Reyes Becerra Perez, Jialei Gong, James Monkman, Divya Agrawal, Arutha Kulasinghe, Quan Nguyen, Zewen Kelvin Tuong
{"title":"细胞-细胞相互作用作为癌症药物反应的预测和预后标志物。","authors":"Xuehan Lu, Xiao Tan, Eun Ju Kim, Xinnan Jin, Meg L Donovan, Jazmina L Gonzalez Cruz, Zherui Xiong, Maria Reyes Becerra de Los Reyes Becerra Perez, Jialei Gong, James Monkman, Divya Agrawal, Arutha Kulasinghe, Quan Nguyen, Zewen Kelvin Tuong","doi":"10.1186/s13073-025-01518-5","DOIUrl":null,"url":null,"abstract":"<p><p>The tumor microenvironment (TME) is composed of a diverse and dynamic spectrum of cell types, cellular activities, and cell-cell interactions (CCI). Understanding the complex CCI within the TME is critical for advancing cancer treatment strategies, including modulating or predicting drug responses. Recent advances in omics technologies, including spatial transcriptomics and proteomics, have allowed improved mapping of CCI within the TME. The integration of omics insights from different platforms may facilitate the identification of novel biomarkers and therapeutic targets. This review discusses the latest computational methods for inferring CCIs from different omics data and various CCI and drug databases, emphasizing their applications in predicting drug responses. We also comprehensively summarize recent patents, clinical trials, and publications that leverage these cellular interactions to refine cancer treatment approaches. We believe that the integration of these CCI-focused technologies can improve personalized therapy for cancer patients, thereby optimizing treatment outcomes and paving the way for next-generation precision oncology.</p>","PeriodicalId":12645,"journal":{"name":"Genome Medicine","volume":"17 1","pages":"117"},"PeriodicalIF":10.4000,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12506067/pdf/","citationCount":"0","resultStr":"{\"title\":\"Cell-cell interactions as predictive and prognostic markers for drug responses in cancer.\",\"authors\":\"Xuehan Lu, Xiao Tan, Eun Ju Kim, Xinnan Jin, Meg L Donovan, Jazmina L Gonzalez Cruz, Zherui Xiong, Maria Reyes Becerra de Los Reyes Becerra Perez, Jialei Gong, James Monkman, Divya Agrawal, Arutha Kulasinghe, Quan Nguyen, Zewen Kelvin Tuong\",\"doi\":\"10.1186/s13073-025-01518-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The tumor microenvironment (TME) is composed of a diverse and dynamic spectrum of cell types, cellular activities, and cell-cell interactions (CCI). Understanding the complex CCI within the TME is critical for advancing cancer treatment strategies, including modulating or predicting drug responses. Recent advances in omics technologies, including spatial transcriptomics and proteomics, have allowed improved mapping of CCI within the TME. The integration of omics insights from different platforms may facilitate the identification of novel biomarkers and therapeutic targets. This review discusses the latest computational methods for inferring CCIs from different omics data and various CCI and drug databases, emphasizing their applications in predicting drug responses. We also comprehensively summarize recent patents, clinical trials, and publications that leverage these cellular interactions to refine cancer treatment approaches. We believe that the integration of these CCI-focused technologies can improve personalized therapy for cancer patients, thereby optimizing treatment outcomes and paving the way for next-generation precision oncology.</p>\",\"PeriodicalId\":12645,\"journal\":{\"name\":\"Genome Medicine\",\"volume\":\"17 1\",\"pages\":\"117\"},\"PeriodicalIF\":10.4000,\"publicationDate\":\"2025-10-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12506067/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genome Medicine\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1186/s13073-025-01518-5\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genome Medicine","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1186/s13073-025-01518-5","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Cell-cell interactions as predictive and prognostic markers for drug responses in cancer.
The tumor microenvironment (TME) is composed of a diverse and dynamic spectrum of cell types, cellular activities, and cell-cell interactions (CCI). Understanding the complex CCI within the TME is critical for advancing cancer treatment strategies, including modulating or predicting drug responses. Recent advances in omics technologies, including spatial transcriptomics and proteomics, have allowed improved mapping of CCI within the TME. The integration of omics insights from different platforms may facilitate the identification of novel biomarkers and therapeutic targets. This review discusses the latest computational methods for inferring CCIs from different omics data and various CCI and drug databases, emphasizing their applications in predicting drug responses. We also comprehensively summarize recent patents, clinical trials, and publications that leverage these cellular interactions to refine cancer treatment approaches. We believe that the integration of these CCI-focused technologies can improve personalized therapy for cancer patients, thereby optimizing treatment outcomes and paving the way for next-generation precision oncology.
期刊介绍:
Genome Medicine is an open access journal that publishes outstanding research applying genetics, genomics, and multi-omics to understand, diagnose, and treat disease. Bridging basic science and clinical research, it covers areas such as cancer genomics, immuno-oncology, immunogenomics, infectious disease, microbiome, neurogenomics, systems medicine, clinical genomics, gene therapies, precision medicine, and clinical trials. The journal publishes original research, methods, software, and reviews to serve authors and promote broad interest and importance in the field.