巴西利什曼原虫表位的抗原性评价。

IF 2.4 Q3 BIOCHEMICAL RESEARCH METHODS
Bioinformatics and Biology Insights Pub Date : 2025-10-05 eCollection Date: 2025-01-01 DOI:10.1177/11779322251375244
Ntc Costa, Ams Pereira, C C Silva, Abx Silva, E O Souza, Lfgr Ferreira, M Z Hernandes, Vra Pereira
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引用次数: 0

摘要

背景:利什曼病是由利什曼属原生动物引起的一种被忽视的热带病,主要影响社会经济资源有限的人群。巴西利什曼原虫是巴西皮肤利什曼病(CL)的主要病原之一。本研究的目的是评估IgG抗体与10种巴西血吸虫抗原之间的相互作用,以用于诊断巴西血吸虫。这些抗原是根据我们小组先前的研究,使用硅反向疫苗学方法选择的。方法:从SAbDab数据库中检索124个IgG抗体结构。抗原-抗体(Ag-Ab)复合物使用在Rosetta平台上实施的SnugDock协议进行分子对接分析。同时,采用酶联免疫吸附试验(ELISA)来评估所选肽在检测活性CL中的诊断性能。结果:肽VIII、VI、V和I显示出最有利的对接得分,表明与IgG具有较高的预测结合亲和力。在ELISA检测中,敏感性从0%到96%不等,而特异性从29%到86%不等。多肽III、IV和V表现出最高的灵敏度,分别达到96%、96%和94%。结论:考虑到计算机和体外结果,肽IV和V的相关性显著,与计算中使用的抗体集(Ab)具有更高的预测亲和力(更多的负对接评分值)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Evaluation of the Antigenic Potential of Epitopes Derived From Leishmania braziliensis.

Background: Leishmaniasis is a neglected tropical disease caused by protozoa of the genus Leishmania, predominantly affecting populations with limited socioeconomic resources. Leishmania (V.) braziliensis is one of the primary etiological agents for cutaneous leishmaniasis (CL) in Brazil. This study aims to evaluate the interactions between IgG antibodies and 10 antigens derived from L braziliensis for diagnostic applications. These antigens were selected using in silico reverse vaccinology approaches, based on previous research conducted by our group. Methods: A total of 124 IgG antibody structures were retrieved from the SAbDab database. Antigen-antibody (Ag-Ab) complexes were subjected to molecular docking analyses using the SnugDock protocol implemented in the Rosetta platform. In parallel, enzyme-linked immunosorbent assays (ELISA) were performed to assess the diagnostic performance of the selected peptides in detecting active CL. Results: Peptides VIII, VI, V, and I showed the most favorable docking scores, indicating a higher predicted binding affinity with IgG. In ELISA assays, sensitivity values ranged from 0% to 96%, whereas specificity varied from 29% to 86%. Peptides III, IV, and V demonstrated the highest sensitivity, achieving values of 96%, 96%, and 94%, respectively. Conclusions: Considering both in silico and in vitro results, peptides IV and V corroborate significatively, demonstrating higher predicted affinity (more negative docking score values) with the set of antibodies (Ab) used in calculations.

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来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
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