基于氧化应激-糖酵解共调节网络的动脉粥样硬化诊断模型。

IF 3.7 2区 生物学 Q3 CELL BIOLOGY
Weiqing Han, Xiang Long, Shuqiang Zhu, Mingchun You, Jianjun Xu
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引用次数: 0

摘要

动脉粥样硬化(AS)是一种主要的心血管疾病,在早期诊断和缺乏个性化治疗方面存在挑战,需要紧急关注。本研究采用生物信息学方法鉴定与AS发病机制相关的关键遗传标记,并探索其潜在的分子机制,以促进诊断准确性和治疗干预的进步。我们成功鉴定出在AS中表现出显著差异表达的基因,即氧化应激和糖酵解相关的差异表达基因(OSGRDEGs)。通过加权基因共表达网络分析,筛选出与AS显著相关的3个模块(MEturquoise、meed、MEgreen),发现72个模块基因与OSGRDEGs相同。通过对STRING数据库数据的综合整合,设计蛋白质-蛋白质相互作用网络,并利用Cytoscape软件进行可视化和拓扑分析。在CytoHubba插件中使用五种不同的算法进一步评估候选基因,得到12个与AS发病机制相关的高可信度中心基因。将机器算法筛选的12个轮毂基因进一步建模筛选,得到7个关键基因。最后,统计分析显示,在比较组中,8种免疫细胞群的浸润水平存在显著差异。单核细胞和M0巨噬细胞在A和b亚型中呈显著负相关,APOE和CXCL1分别与M0巨噬细胞和单核细胞呈强正相关,我们的相关分析证实了这一点。本研究强调使用生物信息学方法来识别AS的分子标记,未来的工作重点是验证其潜在的临床应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A diagnostic model of atherosclerosis based on the oxidative stress-glycolysis co-regulatory network.

Atherosclerosis (AS) is a major cardiovascular disorder, with challenges in early diagnosis and a lack of individualized treatment that require urgent attention. This study employed bioinformatics approaches to identify critical genetic markers linked to AS pathogenesis and explored their underlying molecular mechanisms to facilitate advancements in diagnostic accuracy and therapeutic interventions. We successfully identified genes exhibiting significant differential expression in AS, i.e., oxidative stress and glycolysis-related differentially expressed genes (OSGRDEGs). Through weighted gene co-expression network analysis, three modules (MEturquoise, MEred, and MEgreen) significantly associated with AS were screened, and 72 module genes were found to be identical to OSGRDEGs. A protein-protein interaction network was designed through comprehensive integration of data from the STRING database, followed by visualization and topological analysis employing Cytoscape software. Candidate genes were further evaluated using five distinct algorithms within the CytoHubba plugin, resulting in 12 high-confidence hub genes associated with AS pathogenesis. The 12 hub genes screened by machine algorithm were further screened by modeling to obtain 7 key genes. Finally, statistical analysis revealed marked variations in the infiltration levels of eight immune cell populations across the comparative groups. Monocytes and M0 macrophages showed significant negative correlations in subtypes A and B. Notably, APOE and CXCL1 demonstrated strong positive associations with M0 macrophages and monocytes, respectively, as evidenced by our correlation analysis. This study highlights the use of a bioinformatics approach to identify molecular markers of AS, with future work focused on validating their potential clinical applications.

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来源期刊
Molecular and Cellular Biochemistry
Molecular and Cellular Biochemistry 生物-细胞生物学
CiteScore
8.30
自引率
2.30%
发文量
293
审稿时长
1.7 months
期刊介绍: Molecular and Cellular Biochemistry: An International Journal for Chemical Biology in Health and Disease publishes original research papers and short communications in all areas of the biochemical sciences, emphasizing novel findings relevant to the biochemical basis of cellular function and disease processes, as well as the mechanics of action of hormones and chemical agents. Coverage includes membrane transport, receptor mechanism, immune response, secretory processes, and cytoskeletal function, as well as biochemical structure-function relationships in the cell. In addition to the reports of original research, the journal publishes state of the art reviews. Specific subjects covered by Molecular and Cellular Biochemistry include cellular metabolism, cellular pathophysiology, enzymology, ion transport, lipid biochemistry, membrane biochemistry, molecular biology, nuclear structure and function, and protein chemistry.
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