{"title":"荧光三唑基非天然氨基酸在蛋白质工程中的应用:超级文件夹绿色荧光蛋白的编码和光谱研究。","authors":"Subhendu Sekhar Bag, Aniket Banerjee, Sinchini Barman, Sankalp Tiwari","doi":"10.1016/j.bioorg.2025.109045","DOIUrl":null,"url":null,"abstract":"<p><p>CuAAC-derived fluorescent unnatural amino acids (FTUAAs) have been highly advantageous owing to their enhanced stability, increased resistance to proteolysis, better biocompatibility, and modulated photophysics. However, such a unique class of amino acids has never been previously incorporated into desired protein sequences using the genetic code expansion (GCE) approach. Herein, we have reported our pioneering efforts towards the site-specific incorporation of several novel FTUAAs into the 150th codon position of Super Folder Green Fluorescent Protein (sfGFP), followed by their expression in E. coli cells and the study of their photophysics. A Methanosarcina mazei-derived pyrrolysyl-tRNA synthetase, namely Tet 3.0 aaRS, and its corresponding tRNA pair have been utilised in these studies. The results have indicated the efficient incorporation of all the unnatural amino acids in different experimental settings. Studies of photophysical properties, MALDI TOF mass analysis, fluorescence microscopy, and molecular docking have validated our claims. In fact, the incorporation of FTUAAs into reporter sfGFP using the GCE technique has potentially opened up a gateway for incorporating amino acids containing an integral triazole moiety into any protein sequence to expand their functionalities. Incorporating FTUAAs can also help intrinsically label proteins to understand their roles in various molecular pathways, among other applications.</p>","PeriodicalId":257,"journal":{"name":"Bioorganic Chemistry","volume":"165 ","pages":"109045"},"PeriodicalIF":4.7000,"publicationDate":"2025-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Fluorescent Triazolyl unnatural amino acids in protein engineering: Encoding super folder green fluorescent protein and spectroscopic study.\",\"authors\":\"Subhendu Sekhar Bag, Aniket Banerjee, Sinchini Barman, Sankalp Tiwari\",\"doi\":\"10.1016/j.bioorg.2025.109045\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>CuAAC-derived fluorescent unnatural amino acids (FTUAAs) have been highly advantageous owing to their enhanced stability, increased resistance to proteolysis, better biocompatibility, and modulated photophysics. However, such a unique class of amino acids has never been previously incorporated into desired protein sequences using the genetic code expansion (GCE) approach. Herein, we have reported our pioneering efforts towards the site-specific incorporation of several novel FTUAAs into the 150th codon position of Super Folder Green Fluorescent Protein (sfGFP), followed by their expression in E. coli cells and the study of their photophysics. A Methanosarcina mazei-derived pyrrolysyl-tRNA synthetase, namely Tet 3.0 aaRS, and its corresponding tRNA pair have been utilised in these studies. The results have indicated the efficient incorporation of all the unnatural amino acids in different experimental settings. Studies of photophysical properties, MALDI TOF mass analysis, fluorescence microscopy, and molecular docking have validated our claims. In fact, the incorporation of FTUAAs into reporter sfGFP using the GCE technique has potentially opened up a gateway for incorporating amino acids containing an integral triazole moiety into any protein sequence to expand their functionalities. Incorporating FTUAAs can also help intrinsically label proteins to understand their roles in various molecular pathways, among other applications.</p>\",\"PeriodicalId\":257,\"journal\":{\"name\":\"Bioorganic Chemistry\",\"volume\":\"165 \",\"pages\":\"109045\"},\"PeriodicalIF\":4.7000,\"publicationDate\":\"2025-09-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bioorganic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1016/j.bioorg.2025.109045\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bioorganic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1016/j.bioorg.2025.109045","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Fluorescent Triazolyl unnatural amino acids in protein engineering: Encoding super folder green fluorescent protein and spectroscopic study.
CuAAC-derived fluorescent unnatural amino acids (FTUAAs) have been highly advantageous owing to their enhanced stability, increased resistance to proteolysis, better biocompatibility, and modulated photophysics. However, such a unique class of amino acids has never been previously incorporated into desired protein sequences using the genetic code expansion (GCE) approach. Herein, we have reported our pioneering efforts towards the site-specific incorporation of several novel FTUAAs into the 150th codon position of Super Folder Green Fluorescent Protein (sfGFP), followed by their expression in E. coli cells and the study of their photophysics. A Methanosarcina mazei-derived pyrrolysyl-tRNA synthetase, namely Tet 3.0 aaRS, and its corresponding tRNA pair have been utilised in these studies. The results have indicated the efficient incorporation of all the unnatural amino acids in different experimental settings. Studies of photophysical properties, MALDI TOF mass analysis, fluorescence microscopy, and molecular docking have validated our claims. In fact, the incorporation of FTUAAs into reporter sfGFP using the GCE technique has potentially opened up a gateway for incorporating amino acids containing an integral triazole moiety into any protein sequence to expand their functionalities. Incorporating FTUAAs can also help intrinsically label proteins to understand their roles in various molecular pathways, among other applications.
期刊介绍:
Bioorganic Chemistry publishes research that addresses biological questions at the molecular level, using organic chemistry and principles of physical organic chemistry. The scope of the journal covers a range of topics at the organic chemistry-biology interface, including: enzyme catalysis, biotransformation and enzyme inhibition; nucleic acids chemistry; medicinal chemistry; natural product chemistry, natural product synthesis and natural product biosynthesis; antimicrobial agents; lipid and peptide chemistry; biophysical chemistry; biological probes; bio-orthogonal chemistry and biomimetic chemistry.
For manuscripts dealing with synthetic bioactive compounds, the Journal requires that the molecular target of the compounds described must be known, and must be demonstrated experimentally in the manuscript. For studies involving natural products, if the molecular target is unknown, some data beyond simple cell-based toxicity studies to provide insight into the mechanism of action is required. Studies supported by molecular docking are welcome, but must be supported by experimental data. The Journal does not consider manuscripts that are purely theoretical or computational in nature.
The Journal publishes regular articles, short communications and reviews. Reviews are normally invited by Editors or Editorial Board members. Authors of unsolicited reviews should first contact an Editor or Editorial Board member to determine whether the proposed article is within the scope of the Journal.