Siyavash Shabani , Sahar A Mohammed , Muhammad Sohaib , Bahram Parvin
{"title":"MACA-Net:多孔径曲率感知网络的实例核分割","authors":"Siyavash Shabani , Sahar A Mohammed , Muhammad Sohaib , Bahram Parvin","doi":"10.1016/j.bspc.2025.108711","DOIUrl":null,"url":null,"abstract":"<div><div>Nuclei instance segmentation is one of the most challenging tasks and is considered the first step in automated pathology. The challenges stem from technical biological variations, and high cellular density that lead adjacent nuclei to form perceptual boundaries. This paper demonstrates that a multi-aperture representation encoded by the fusion of Swin Transformers and Convolutional blocks improves nuclei segmentation. The loss function is augmented with the curvature and centroid consistency terms between the growth truth and the prediction to preserve morphometric fidelity and localization. These terms are used to panelize for the loss of shape localization (e.g., a mid-level attribute) and mismatches in low and high-frequency boundary events (e.g., a low-level attribute). The proposed model is evaluated on three publicly available datasets: PanNuke, MoNuSeg, and CPM17, reporting improved Dice and binary Panoptic Quality (PQ) scores. For example, the PQ scores for PanNuke, MoNuSeg, and CPM17 are 0.6888 ± 0.032, 0.634 ± 0.003, and 0.716 ± 0.002, respectively. The code is located at <span><span>https://github.com/Siyavashshabani/MACA-Net</span><svg><path></path></svg></span>.</div></div>","PeriodicalId":55362,"journal":{"name":"Biomedical Signal Processing and Control","volume":"112 ","pages":"Article 108711"},"PeriodicalIF":4.9000,"publicationDate":"2025-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"MACA-Net: Multi-aperture curvature aware network for instance-nuclei segmentation\",\"authors\":\"Siyavash Shabani , Sahar A Mohammed , Muhammad Sohaib , Bahram Parvin\",\"doi\":\"10.1016/j.bspc.2025.108711\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Nuclei instance segmentation is one of the most challenging tasks and is considered the first step in automated pathology. The challenges stem from technical biological variations, and high cellular density that lead adjacent nuclei to form perceptual boundaries. This paper demonstrates that a multi-aperture representation encoded by the fusion of Swin Transformers and Convolutional blocks improves nuclei segmentation. The loss function is augmented with the curvature and centroid consistency terms between the growth truth and the prediction to preserve morphometric fidelity and localization. These terms are used to panelize for the loss of shape localization (e.g., a mid-level attribute) and mismatches in low and high-frequency boundary events (e.g., a low-level attribute). The proposed model is evaluated on three publicly available datasets: PanNuke, MoNuSeg, and CPM17, reporting improved Dice and binary Panoptic Quality (PQ) scores. For example, the PQ scores for PanNuke, MoNuSeg, and CPM17 are 0.6888 ± 0.032, 0.634 ± 0.003, and 0.716 ± 0.002, respectively. The code is located at <span><span>https://github.com/Siyavashshabani/MACA-Net</span><svg><path></path></svg></span>.</div></div>\",\"PeriodicalId\":55362,\"journal\":{\"name\":\"Biomedical Signal Processing and Control\",\"volume\":\"112 \",\"pages\":\"Article 108711\"},\"PeriodicalIF\":4.9000,\"publicationDate\":\"2025-10-02\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biomedical Signal Processing and Control\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1746809425012224\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical Signal Processing and Control","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1746809425012224","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
MACA-Net: Multi-aperture curvature aware network for instance-nuclei segmentation
Nuclei instance segmentation is one of the most challenging tasks and is considered the first step in automated pathology. The challenges stem from technical biological variations, and high cellular density that lead adjacent nuclei to form perceptual boundaries. This paper demonstrates that a multi-aperture representation encoded by the fusion of Swin Transformers and Convolutional blocks improves nuclei segmentation. The loss function is augmented with the curvature and centroid consistency terms between the growth truth and the prediction to preserve morphometric fidelity and localization. These terms are used to panelize for the loss of shape localization (e.g., a mid-level attribute) and mismatches in low and high-frequency boundary events (e.g., a low-level attribute). The proposed model is evaluated on three publicly available datasets: PanNuke, MoNuSeg, and CPM17, reporting improved Dice and binary Panoptic Quality (PQ) scores. For example, the PQ scores for PanNuke, MoNuSeg, and CPM17 are 0.6888 ± 0.032, 0.634 ± 0.003, and 0.716 ± 0.002, respectively. The code is located at https://github.com/Siyavashshabani/MACA-Net.
期刊介绍:
Biomedical Signal Processing and Control aims to provide a cross-disciplinary international forum for the interchange of information on research in the measurement and analysis of signals and images in clinical medicine and the biological sciences. Emphasis is placed on contributions dealing with the practical, applications-led research on the use of methods and devices in clinical diagnosis, patient monitoring and management.
Biomedical Signal Processing and Control reflects the main areas in which these methods are being used and developed at the interface of both engineering and clinical science. The scope of the journal is defined to include relevant review papers, technical notes, short communications and letters. Tutorial papers and special issues will also be published.