{"title":"新型5-氟尿嘧啶杂交体胸苷酸合成酶抑制剂的设计与计算研究","authors":"Dishank Purandare , Prajakta Adsule , Rahul Jawarkar , Aryaa Nigade , Satish Polshettiwar","doi":"10.1016/j.compbiolchem.2025.108697","DOIUrl":null,"url":null,"abstract":"<div><div>Cancer is a multifactorial disease characterized by uncontrolled cellular proliferation and impaired regulatory mechanisms, and among its diverse forms, NSCLC remains one of the most prevalent and lethal malignancies worldwide. To address NSCLC, scientists are placing great emphasis on drugs that can reduce cell resistance, improve potency or prevent DNA alterations. Recent studies on TS inhibitors have demonstrated the potential of effective management of NSCLC with minimal adverse reactions. Therefore, there is a demand for more advanced and efficient anti-cancer medications targeting TS inhibitors, as promised in the development of new anti-cancer drugs that have reduced or no adverse effects. The objectives of our recent study were to design and evaluate 5-FU-based hybrids that can inhibit TS in comparison to already known inhibitors such as Raltitrexed. We designed and performed a detailed computational study on 5-FU hybrids, intending to use them as possible inhibitors of TS. After performing various studies on 12 molecules designed, it was found that compounds C04, C08, and C12 presented better results when compared with the standard drug (Raltitrexed). Not only that, but all the designed compounds showed higher stability when compared to the standard drug. Compounds C04, C08 and C12 were chosen for additional screening for molecular studies like Free landscape energy, Principal component analysis, free binding energy study and MD Simulation. Docking investigation utilised the crystal structure of the thymidylate synthase inhibitor enzyme (PDB ID: 6ZXO). Further, MD simulations and QSAR Studies were performed, and satisfactory results were obtained, suggesting future potential drugs for the treatment of NSCLC.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"120 ","pages":"Article 108697"},"PeriodicalIF":3.1000,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Designing and computational studies of Novel 5-Fluorouracil hybrids as thymidylate synthase inhibitors for targeting non small cell lung cancer\",\"authors\":\"Dishank Purandare , Prajakta Adsule , Rahul Jawarkar , Aryaa Nigade , Satish Polshettiwar\",\"doi\":\"10.1016/j.compbiolchem.2025.108697\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Cancer is a multifactorial disease characterized by uncontrolled cellular proliferation and impaired regulatory mechanisms, and among its diverse forms, NSCLC remains one of the most prevalent and lethal malignancies worldwide. To address NSCLC, scientists are placing great emphasis on drugs that can reduce cell resistance, improve potency or prevent DNA alterations. Recent studies on TS inhibitors have demonstrated the potential of effective management of NSCLC with minimal adverse reactions. Therefore, there is a demand for more advanced and efficient anti-cancer medications targeting TS inhibitors, as promised in the development of new anti-cancer drugs that have reduced or no adverse effects. The objectives of our recent study were to design and evaluate 5-FU-based hybrids that can inhibit TS in comparison to already known inhibitors such as Raltitrexed. We designed and performed a detailed computational study on 5-FU hybrids, intending to use them as possible inhibitors of TS. After performing various studies on 12 molecules designed, it was found that compounds C04, C08, and C12 presented better results when compared with the standard drug (Raltitrexed). Not only that, but all the designed compounds showed higher stability when compared to the standard drug. Compounds C04, C08 and C12 were chosen for additional screening for molecular studies like Free landscape energy, Principal component analysis, free binding energy study and MD Simulation. Docking investigation utilised the crystal structure of the thymidylate synthase inhibitor enzyme (PDB ID: 6ZXO). Further, MD simulations and QSAR Studies were performed, and satisfactory results were obtained, suggesting future potential drugs for the treatment of NSCLC.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"120 \",\"pages\":\"Article 108697\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-09-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927125003585\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927125003585","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
Designing and computational studies of Novel 5-Fluorouracil hybrids as thymidylate synthase inhibitors for targeting non small cell lung cancer
Cancer is a multifactorial disease characterized by uncontrolled cellular proliferation and impaired regulatory mechanisms, and among its diverse forms, NSCLC remains one of the most prevalent and lethal malignancies worldwide. To address NSCLC, scientists are placing great emphasis on drugs that can reduce cell resistance, improve potency or prevent DNA alterations. Recent studies on TS inhibitors have demonstrated the potential of effective management of NSCLC with minimal adverse reactions. Therefore, there is a demand for more advanced and efficient anti-cancer medications targeting TS inhibitors, as promised in the development of new anti-cancer drugs that have reduced or no adverse effects. The objectives of our recent study were to design and evaluate 5-FU-based hybrids that can inhibit TS in comparison to already known inhibitors such as Raltitrexed. We designed and performed a detailed computational study on 5-FU hybrids, intending to use them as possible inhibitors of TS. After performing various studies on 12 molecules designed, it was found that compounds C04, C08, and C12 presented better results when compared with the standard drug (Raltitrexed). Not only that, but all the designed compounds showed higher stability when compared to the standard drug. Compounds C04, C08 and C12 were chosen for additional screening for molecular studies like Free landscape energy, Principal component analysis, free binding energy study and MD Simulation. Docking investigation utilised the crystal structure of the thymidylate synthase inhibitor enzyme (PDB ID: 6ZXO). Further, MD simulations and QSAR Studies were performed, and satisfactory results were obtained, suggesting future potential drugs for the treatment of NSCLC.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.