VineColD:全球葡萄抗寒性历史追踪和实时监测的综合数据库。

IF 3.6 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Hongrui Wang, Jason P Londo
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引用次数: 0

摘要

抗寒性是决定葡萄在休眠期能否存活的重要生理参数。葡萄抗寒性的准确建模和大规模预测对于评估葡萄种植的潜在地理分布,量化气候变化对葡萄栖息地的影响,以及确保全球以凉爽或寒冷休眠季节为特征的地区葡萄和葡萄酒产业的可持续性至关重要。然而,到目前为止,还没有一个全面的数据库。在这项研究中,我们将先进的自动化机器学习技术与广泛的历史和当前天气数据相结合,创建了一个葡萄抗寒性的综合数据库:VineColD (https://cornell-tree-fruit-physiology.shinyapps.io/VineColD/)。我们开发了NYUS.2.1模型,这是一个基于自动机器学习的预测葡萄抗寒性的系统,并将其应用于1960年至2024年两个半球30°至55°纬度之间的17,985个规划气象站的全球历史天气数据,从而开发了一个综合葡萄抗寒性数据库和监测系统VineColD。VineColD集成了全球历史数据集和每日更新的区域抗寒性系统,为研究54个葡萄品种的葡萄抗寒性提供了全面的资源。该平台提供了多种下载选项,从单站数据到完整的数据集,交互式多功能R Shiny应用程序便于数据分析和可视化。VineColD提供了气候变化对葡萄种植影响的重要见解,并支持一系列分析功能,使其成为葡萄种植者和研究人员的宝贵工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

VineColD: an integrative database for global historical tracing and real-time monitoring of grapevine cold hardiness.

VineColD: an integrative database for global historical tracing and real-time monitoring of grapevine cold hardiness.

VineColD: an integrative database for global historical tracing and real-time monitoring of grapevine cold hardiness.

VineColD: an integrative database for global historical tracing and real-time monitoring of grapevine cold hardiness.

Cold hardiness is a crucial physiological parameter that determines the survival of grapevines during the dormant season. Accurate modelling and large-scale prediction of grapevine cold hardiness are essential for assessing the potential geographic distribution of grapevine cultivation, quantifying the impact of climate change on grapevine habitats, and ensuring the sustainability of the grape and wine industries worldwide in the regions characterized by cool or cold dormant seasons. However, until now, no comprehensive database has been available. In this research, we combined advanced automated machine learning techniques with extensive historical and current weather data to create an integrative database for grapevine cold hardiness: VineColD (https://cornell-tree-fruit-physiology.shinyapps.io/VineColD/). We developed the NYUS.2.1 model, an automated machine learning-based system for predicting grapevine cold hardiness and applied it to global historical weather data from 17,985 curated weather stations between latitudes 30° and 55° in both hemispheres from 1960 to 2024, resulting in the development of an integrative grapevine cold hardiness database and monitoring system, VineColD. VineColD integrates both a global historical dataset and a daily updated regional cold hardiness system, offering a comprehensive resource to study grape cold hardiness for 54 grapevine cultivars. The platform provides multiple download options, from single-station data to complete datasets, and the interactive multifunctional R Shiny application facilitates data analysis and visualization. VineColD delivers critical insights into the impact of climate change on grapevine cultivation and supports a range of analytical functions, making it a valuable tool for grape growers and researchers.

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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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