C. Dabora Vincy, G. Bagavathi Sankar, R. S. Bemina, S. Madhan Kumar, S. Sahaya Jude Dhas, A. Arun Kumar, Joselin Beaula T
{"title":"合成生物分子马来酸二苯并咪唑的电荷转移和分子间相互作用分析:综合DFT方法","authors":"C. Dabora Vincy, G. Bagavathi Sankar, R. S. Bemina, S. Madhan Kumar, S. Sahaya Jude Dhas, A. Arun Kumar, Joselin Beaula T","doi":"10.1007/s11224-024-02421-2","DOIUrl":null,"url":null,"abstract":"<div><p>The FT-IR, FT-Raman, and UV–Vis spectra of bis(benzimidazolium) maleate (BM) were analysed. Quantum computations with the DFT methodology were used for finding the stable conformer and structural optimization deploying the Gaussian '09 software. An X-ray diffraction study on a single crystal revealed that the grown crystal is an orthorhombic system with a space group. To examine the numerous intra- and intermolecular interactions in a molecular system, natural bond orbital (NBO) analysis is performed. After completing normal coordinate analysis to identify the vibrational modes, PED assignments were established. According to vibrational analysis, the stretching wavenumber of hydrogen bond donor NH and hydrogen bond acceptor CO<sub>2</sub> is red-shifted due to interaction. DOS spectral analysis is used to investigate the molecular orbital contributions. The HOMO–LUMO analysis is used to determine the studied compound’s conductivity, reactivity, and stability. The COO<sup>−</sup> groups are vulnerable to electrophilic attack, whereas the NH group in the benzimidazolium ring is probably nucleophilic, according to the MEP plot, Fukui function, and natural population analysis. The Kirby-Bauer disc diffusion technique was used to determine the antifungal activity of the BM against <i>Candida albicans</i> and <i>Aspergillus niger</i> fungal pathogens. Molecular docking studies were used to elucidate the interaction between ligands and proteins. According to ADME parameter analysis and the Lipinski rule for the BM molecule, the chemical possesses good drug-like qualities and could eventually be developed into an antifungal medication.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"36 4","pages":"1211 - 1227"},"PeriodicalIF":2.2000,"publicationDate":"2025-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Analysis on the charge transfer and intermolecular interaction of the synthesized biological molecule bis(benzimidazolium) maleate: a comprehensive DFT approach\",\"authors\":\"C. Dabora Vincy, G. Bagavathi Sankar, R. S. Bemina, S. Madhan Kumar, S. Sahaya Jude Dhas, A. Arun Kumar, Joselin Beaula T\",\"doi\":\"10.1007/s11224-024-02421-2\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The FT-IR, FT-Raman, and UV–Vis spectra of bis(benzimidazolium) maleate (BM) were analysed. Quantum computations with the DFT methodology were used for finding the stable conformer and structural optimization deploying the Gaussian '09 software. An X-ray diffraction study on a single crystal revealed that the grown crystal is an orthorhombic system with a space group. To examine the numerous intra- and intermolecular interactions in a molecular system, natural bond orbital (NBO) analysis is performed. After completing normal coordinate analysis to identify the vibrational modes, PED assignments were established. According to vibrational analysis, the stretching wavenumber of hydrogen bond donor NH and hydrogen bond acceptor CO<sub>2</sub> is red-shifted due to interaction. DOS spectral analysis is used to investigate the molecular orbital contributions. The HOMO–LUMO analysis is used to determine the studied compound’s conductivity, reactivity, and stability. The COO<sup>−</sup> groups are vulnerable to electrophilic attack, whereas the NH group in the benzimidazolium ring is probably nucleophilic, according to the MEP plot, Fukui function, and natural population analysis. The Kirby-Bauer disc diffusion technique was used to determine the antifungal activity of the BM against <i>Candida albicans</i> and <i>Aspergillus niger</i> fungal pathogens. Molecular docking studies were used to elucidate the interaction between ligands and proteins. According to ADME parameter analysis and the Lipinski rule for the BM molecule, the chemical possesses good drug-like qualities and could eventually be developed into an antifungal medication.</p></div>\",\"PeriodicalId\":780,\"journal\":{\"name\":\"Structural Chemistry\",\"volume\":\"36 4\",\"pages\":\"1211 - 1227\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2025-01-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Structural Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s11224-024-02421-2\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Structural Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s11224-024-02421-2","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Analysis on the charge transfer and intermolecular interaction of the synthesized biological molecule bis(benzimidazolium) maleate: a comprehensive DFT approach
The FT-IR, FT-Raman, and UV–Vis spectra of bis(benzimidazolium) maleate (BM) were analysed. Quantum computations with the DFT methodology were used for finding the stable conformer and structural optimization deploying the Gaussian '09 software. An X-ray diffraction study on a single crystal revealed that the grown crystal is an orthorhombic system with a space group. To examine the numerous intra- and intermolecular interactions in a molecular system, natural bond orbital (NBO) analysis is performed. After completing normal coordinate analysis to identify the vibrational modes, PED assignments were established. According to vibrational analysis, the stretching wavenumber of hydrogen bond donor NH and hydrogen bond acceptor CO2 is red-shifted due to interaction. DOS spectral analysis is used to investigate the molecular orbital contributions. The HOMO–LUMO analysis is used to determine the studied compound’s conductivity, reactivity, and stability. The COO− groups are vulnerable to electrophilic attack, whereas the NH group in the benzimidazolium ring is probably nucleophilic, according to the MEP plot, Fukui function, and natural population analysis. The Kirby-Bauer disc diffusion technique was used to determine the antifungal activity of the BM against Candida albicans and Aspergillus niger fungal pathogens. Molecular docking studies were used to elucidate the interaction between ligands and proteins. According to ADME parameter analysis and the Lipinski rule for the BM molecule, the chemical possesses good drug-like qualities and could eventually be developed into an antifungal medication.
期刊介绍:
Structural Chemistry is an international forum for the publication of peer-reviewed original research papers that cover the condensed and gaseous states of matter and involve numerous techniques for the determination of structure and energetics, their results, and the conclusions derived from these studies. The journal overcomes the unnatural separation in the current literature among the areas of structure determination, energetics, and applications, as well as builds a bridge to other chemical disciplines. Ist comprehensive coverage encompasses broad discussion of results, observation of relationships among various properties, and the description and application of structure and energy information in all domains of chemistry.
We welcome the broadest range of accounts of research in structural chemistry involving the discussion of methodologies and structures,experimental, theoretical, and computational, and their combinations. We encourage discussions of structural information collected for their chemicaland biological significance.