Marwan Abbas , Bogdan Badic , Gustavo Andrade-Miranda , Vincent Bourbonne , Vincent Jaouen , Dimitris Visvikis , Pierre-Henri Conze
{"title":"探讨大肠癌肝转移深度分割的学习可转移性","authors":"Marwan Abbas , Bogdan Badic , Gustavo Andrade-Miranda , Vincent Bourbonne , Vincent Jaouen , Dimitris Visvikis , Pierre-Henri Conze","doi":"10.1016/j.compbiomed.2025.111076","DOIUrl":null,"url":null,"abstract":"<div><div>Ensuring the seamless transfer of knowledge and models across various datasets and clinical contexts is of paramount importance in medical image segmentation. This is especially true for liver lesion segmentation which plays a key role in pre-operative planning and treatment follow-up. Despite the progress of deep learning algorithms using Transformers, automatically segmenting small hepatic metastases remains a persistent challenge. This can be attributed to the degradation of small structures due to the intrinsic process of feature down-sampling inherent to many deep architectures, coupled with the imbalance between foreground metastases voxels and background. While similar challenges have been observed for liver tumors originated from hepatocellular carcinoma, their manifestation in the context of liver metastasis delineation remains under-explored and require well-defined guidelines. Through comprehensive experiments, this paper aims to bridge this gap and to demonstrate the impact of various transfer learning schemes from off-the-shelf datasets to a dataset containing liver metastases only. Our scale-specific evaluation reveals that models trained from scratch or with domain-specific pre-training demonstrate greater proficiency.</div></div>","PeriodicalId":10578,"journal":{"name":"Computers in biology and medicine","volume":"198 ","pages":"Article 111076"},"PeriodicalIF":6.3000,"publicationDate":"2025-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring learning transferability in deep segmentation of colorectal cancer liver metastases\",\"authors\":\"Marwan Abbas , Bogdan Badic , Gustavo Andrade-Miranda , Vincent Bourbonne , Vincent Jaouen , Dimitris Visvikis , Pierre-Henri Conze\",\"doi\":\"10.1016/j.compbiomed.2025.111076\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Ensuring the seamless transfer of knowledge and models across various datasets and clinical contexts is of paramount importance in medical image segmentation. This is especially true for liver lesion segmentation which plays a key role in pre-operative planning and treatment follow-up. Despite the progress of deep learning algorithms using Transformers, automatically segmenting small hepatic metastases remains a persistent challenge. This can be attributed to the degradation of small structures due to the intrinsic process of feature down-sampling inherent to many deep architectures, coupled with the imbalance between foreground metastases voxels and background. While similar challenges have been observed for liver tumors originated from hepatocellular carcinoma, their manifestation in the context of liver metastasis delineation remains under-explored and require well-defined guidelines. Through comprehensive experiments, this paper aims to bridge this gap and to demonstrate the impact of various transfer learning schemes from off-the-shelf datasets to a dataset containing liver metastases only. Our scale-specific evaluation reveals that models trained from scratch or with domain-specific pre-training demonstrate greater proficiency.</div></div>\",\"PeriodicalId\":10578,\"journal\":{\"name\":\"Computers in biology and medicine\",\"volume\":\"198 \",\"pages\":\"Article 111076\"},\"PeriodicalIF\":6.3000,\"publicationDate\":\"2025-09-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computers in biology and medicine\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0010482525014283\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computers in biology and medicine","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0010482525014283","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOLOGY","Score":null,"Total":0}
Exploring learning transferability in deep segmentation of colorectal cancer liver metastases
Ensuring the seamless transfer of knowledge and models across various datasets and clinical contexts is of paramount importance in medical image segmentation. This is especially true for liver lesion segmentation which plays a key role in pre-operative planning and treatment follow-up. Despite the progress of deep learning algorithms using Transformers, automatically segmenting small hepatic metastases remains a persistent challenge. This can be attributed to the degradation of small structures due to the intrinsic process of feature down-sampling inherent to many deep architectures, coupled with the imbalance between foreground metastases voxels and background. While similar challenges have been observed for liver tumors originated from hepatocellular carcinoma, their manifestation in the context of liver metastasis delineation remains under-explored and require well-defined guidelines. Through comprehensive experiments, this paper aims to bridge this gap and to demonstrate the impact of various transfer learning schemes from off-the-shelf datasets to a dataset containing liver metastases only. Our scale-specific evaluation reveals that models trained from scratch or with domain-specific pre-training demonstrate greater proficiency.
期刊介绍:
Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.