探讨大肠癌肝转移深度分割的学习可转移性

IF 6.3 2区 医学 Q1 BIOLOGY
Marwan Abbas , Bogdan Badic , Gustavo Andrade-Miranda , Vincent Bourbonne , Vincent Jaouen , Dimitris Visvikis , Pierre-Henri Conze
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引用次数: 0

摘要

在医学图像分割中,确保跨各种数据集和临床环境的知识和模型的无缝转移至关重要。对于肝病变的分割尤其如此,它在术前计划和治疗随访中起着关键作用。尽管使用transformer的深度学习算法取得了进展,但自动分割小的肝转移瘤仍然是一个持续的挑战。这可能是由于许多深层结构固有的特征降采样过程导致小结构的退化,加上前景转移体素和背景之间的不平衡。虽然类似的挑战已被观察到起源于肝细胞癌的肝脏肿瘤,但其在肝转移描述背景下的表现仍未得到充分探索,需要明确的指导方针。通过综合实验,本文旨在弥合这一差距,并展示从现成数据集到仅包含肝转移的数据集的各种迁移学习方案的影响。我们特定于规模的评估显示,从零开始训练的模型或使用特定于领域的预训练显示出更高的熟练程度。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring learning transferability in deep segmentation of colorectal cancer liver metastases
Ensuring the seamless transfer of knowledge and models across various datasets and clinical contexts is of paramount importance in medical image segmentation. This is especially true for liver lesion segmentation which plays a key role in pre-operative planning and treatment follow-up. Despite the progress of deep learning algorithms using Transformers, automatically segmenting small hepatic metastases remains a persistent challenge. This can be attributed to the degradation of small structures due to the intrinsic process of feature down-sampling inherent to many deep architectures, coupled with the imbalance between foreground metastases voxels and background. While similar challenges have been observed for liver tumors originated from hepatocellular carcinoma, their manifestation in the context of liver metastasis delineation remains under-explored and require well-defined guidelines. Through comprehensive experiments, this paper aims to bridge this gap and to demonstrate the impact of various transfer learning schemes from off-the-shelf datasets to a dataset containing liver metastases only. Our scale-specific evaluation reveals that models trained from scratch or with domain-specific pre-training demonstrate greater proficiency.
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来源期刊
Computers in biology and medicine
Computers in biology and medicine 工程技术-工程:生物医学
CiteScore
11.70
自引率
10.40%
发文量
1086
审稿时长
74 days
期刊介绍: Computers in Biology and Medicine is an international forum for sharing groundbreaking advancements in the use of computers in bioscience and medicine. This journal serves as a medium for communicating essential research, instruction, ideas, and information regarding the rapidly evolving field of computer applications in these domains. By encouraging the exchange of knowledge, we aim to facilitate progress and innovation in the utilization of computers in biology and medicine.
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