monarchr:一个用于查询生物医学知识图谱的R包。

IF 5.4
Shawn T O'Neil, Brian M Schilder, Kevin Schaper, Corey Cox, Daniel Korn, Sarah Gehrke, Christopher J Mungall, Melissa A Haendel
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引用次数: 0

摘要

摘要:生物医学知识图谱(KGs)汇集并提供了丰富的信息,将基因及其变异、疾病、表型等联系起来。虽然这些数据以原始和api托管的形式提供,但迄今为止,在R编程语言中使用kg的功能仍然有限。我们将介绍monarchr,一个用于查询和操作KG数据的包。支持扩展的君主倡议KG是内置的,君主可以容纳知识图谱交换(KGX)格式的任何KG。这个整洁的界面为研究人员提供了一种直观的、迭代的方法来查询和可视化KG数据。可用性和实现:源代码、文档和安装说明可在https://github.com/monarch-initiative/monarchr.Supplementary上获得:补充数据可在Bioinformatics在线上获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
monarchr: An R Package for Querying Biomedical Knowledge Graphs.

Summary: Biomedical Knowledge Graphs (KGs) aggregate and provide a wealth of information, linking genes and their variants, diseases, phenotypes, and much more. While these data are available in raw and API-hosted form, to date functionality for working with KGs in the R programming language has been limited. We introduce monarchr, a package for querying and manipulating KG data. Support for the expansive Monarch Initiative KG is built in, and monarchr can accommodate any KG in the Knowledge Graph eXchange (KGX) format. This tidy-inspired interface offers researchers an intuitive, iterative approach to querying and visualizing KG data.

Availability and implementation: Source code, documentation, and installation instructions are available at https://github.com/monarch-initiative/monarchr.

Supplementary information: Supplementary data are available at Bioinformatics online.

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