J. Ferdous, F. Ali, S. Saha, D. Palit, S. M. A. Kawsar
{"title":"丙酰葡萄糖苷衍生物的合成、抗菌、抗炎、抗氧化活性、分子对接及与羊毛甾醇14α-去甲基化酶的动态模拟","authors":"J. Ferdous, F. Ali, S. Saha, D. Palit, S. M. A. Kawsar","doi":"10.1134/S1068162024606554","DOIUrl":null,"url":null,"abstract":"<p><b>Objective:</b> Carbohydrate derivatives have attracted significant attention due to their broad applications in various industrial and biomedical fields. <b>Methods:</b> In this study, selective propionylation of methyl α-<i>D</i>-glucopyranoside (MDGP, <b>I</b>) was carried out, leading to the synthesis of a series of 2,3,4-tri-<i>O</i>-acyl derivatives (<b>III–VII</b>) from the 6-<i>O</i>-glucopyranoside precursor. The structures of the MDGP derivatives were confirmed by physicochemical characterization, elemental analysis, and spectral data. <i>In vitro</i> antimicrobial assays, along with the Prediction of Activity Spectra for Substances (PASS), indicated promising antifungal activity of these derivatives, which was more pronounced than their antibacterial activity. <b>Results and Discussion:</b> The compounds also exhibited notable antioxidant activity in the DPPH free radical-scavenging assay, surpassing that of the standard antioxidant. Anti-inflammatory properties were evaluated using protein denaturation assays. Supporting these findings, molecular docking studies were performed with lanosterol 14α-demethylase (CYP51A1), revealing significant binding affinities and non-covalent interactions, thereby corroborating the experimental data. The compounds met drug-likeness criteria and demonstrated favorable pharmacokinetic profiles <i>in silico</i>. Notably, compounds (<b>III</b>) and (<b>V</b>) exhibited binding affinities of −10.2 and −10.6 kcal/mol, respectively. During 100 ns molecular dynamics (MD) simulations, the RMSD, RMSF, radius of gyration, and solvent-accessible surface area (SASA) values remained within acceptable ranges. These compounds also formed a greater number of hydrogen bonds. Molecular Mechanics/Poisson–Boltzmann Surface Area (MM/PBSA) analyses of the 3-3LD6 and 5-3LD6 complexes showed that van der Waals, electrostatic, polar solvation, and SASA energy contributions positively influenced the binding free energies. <b>Conclusions:</b> Structure–activity relationship (SAR) analysis, together with <i>in vitro</i> and <i>in silico</i> studies, suggests that MDGP derivatives possess enhanced therapeutic potential and represent promising candidates for the development of new antimicrobial agents.</p>","PeriodicalId":758,"journal":{"name":"Russian Journal of Bioorganic Chemistry","volume":"51 4","pages":"1675 - 1699"},"PeriodicalIF":1.7000,"publicationDate":"2025-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Synthesis, Antimicrobial, Anti-Inflammatory, Antioxidant Activities, Molecular Docking, and Dynamic Simulations with Lanosterol 14α-Demethylase of Propionyl Glucopyranoside Derivatives\",\"authors\":\"J. Ferdous, F. Ali, S. Saha, D. Palit, S. M. A. Kawsar\",\"doi\":\"10.1134/S1068162024606554\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><b>Objective:</b> Carbohydrate derivatives have attracted significant attention due to their broad applications in various industrial and biomedical fields. <b>Methods:</b> In this study, selective propionylation of methyl α-<i>D</i>-glucopyranoside (MDGP, <b>I</b>) was carried out, leading to the synthesis of a series of 2,3,4-tri-<i>O</i>-acyl derivatives (<b>III–VII</b>) from the 6-<i>O</i>-glucopyranoside precursor. The structures of the MDGP derivatives were confirmed by physicochemical characterization, elemental analysis, and spectral data. <i>In vitro</i> antimicrobial assays, along with the Prediction of Activity Spectra for Substances (PASS), indicated promising antifungal activity of these derivatives, which was more pronounced than their antibacterial activity. <b>Results and Discussion:</b> The compounds also exhibited notable antioxidant activity in the DPPH free radical-scavenging assay, surpassing that of the standard antioxidant. Anti-inflammatory properties were evaluated using protein denaturation assays. Supporting these findings, molecular docking studies were performed with lanosterol 14α-demethylase (CYP51A1), revealing significant binding affinities and non-covalent interactions, thereby corroborating the experimental data. The compounds met drug-likeness criteria and demonstrated favorable pharmacokinetic profiles <i>in silico</i>. Notably, compounds (<b>III</b>) and (<b>V</b>) exhibited binding affinities of −10.2 and −10.6 kcal/mol, respectively. During 100 ns molecular dynamics (MD) simulations, the RMSD, RMSF, radius of gyration, and solvent-accessible surface area (SASA) values remained within acceptable ranges. These compounds also formed a greater number of hydrogen bonds. Molecular Mechanics/Poisson–Boltzmann Surface Area (MM/PBSA) analyses of the 3-3LD6 and 5-3LD6 complexes showed that van der Waals, electrostatic, polar solvation, and SASA energy contributions positively influenced the binding free energies. <b>Conclusions:</b> Structure–activity relationship (SAR) analysis, together with <i>in vitro</i> and <i>in silico</i> studies, suggests that MDGP derivatives possess enhanced therapeutic potential and represent promising candidates for the development of new antimicrobial agents.</p>\",\"PeriodicalId\":758,\"journal\":{\"name\":\"Russian Journal of Bioorganic Chemistry\",\"volume\":\"51 4\",\"pages\":\"1675 - 1699\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2025-07-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Russian Journal of Bioorganic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1134/S1068162024606554\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Russian Journal of Bioorganic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1134/S1068162024606554","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
目的:碳水化合物衍生物因其在工业和生物医学领域的广泛应用而备受关注。方法:本研究对甲基α- d -葡萄糖苷(MDGP, I)进行选择性丙酰化,以6- o -葡萄糖苷前体为原料合成一系列2,3,4-三- o -酰基衍生物(III-VII)。通过物理化学表征、元素分析和光谱数据证实了MDGP衍生物的结构。体外抗菌实验和物质活性谱预测(PASS)表明,这些衍生物的抗真菌活性比其抗菌活性更明显。结果和讨论:化合物在DPPH自由基清除试验中也表现出显著的抗氧化活性,超过标准抗氧化剂。用蛋白质变性试验评估抗炎特性。为了支持这些发现,我们与羊毛甾醇14α-去甲基化酶(CYP51A1)进行了分子对接研究,揭示了显著的结合亲和力和非共价相互作用,从而证实了实验数据。这些化合物符合药物相似标准,并在硅片上表现出良好的药代动力学特征。值得注意的是,化合物(III)和(V)的结合亲和力分别为−10.2和−10.6 kcal/mol。在100 ns分子动力学(MD)模拟中,RMSD、RMSF、旋转半径和溶剂可及表面积(SASA)值保持在可接受的范围内。这些化合物还形成了更多的氢键。3-3LD6和5-3LD6配合物的分子力学/泊松-玻尔兹曼表面积(MM/PBSA)分析表明,范德华、静电、极性溶剂化和SASA能的贡献正影响着结合自由能。结论:结构-活性关系(SAR)分析以及体外和计算机研究表明,MDGP衍生物具有增强的治疗潜力,是开发新型抗菌药物的有希望的候选药物。
Synthesis, Antimicrobial, Anti-Inflammatory, Antioxidant Activities, Molecular Docking, and Dynamic Simulations with Lanosterol 14α-Demethylase of Propionyl Glucopyranoside Derivatives
Objective: Carbohydrate derivatives have attracted significant attention due to their broad applications in various industrial and biomedical fields. Methods: In this study, selective propionylation of methyl α-D-glucopyranoside (MDGP, I) was carried out, leading to the synthesis of a series of 2,3,4-tri-O-acyl derivatives (III–VII) from the 6-O-glucopyranoside precursor. The structures of the MDGP derivatives were confirmed by physicochemical characterization, elemental analysis, and spectral data. In vitro antimicrobial assays, along with the Prediction of Activity Spectra for Substances (PASS), indicated promising antifungal activity of these derivatives, which was more pronounced than their antibacterial activity. Results and Discussion: The compounds also exhibited notable antioxidant activity in the DPPH free radical-scavenging assay, surpassing that of the standard antioxidant. Anti-inflammatory properties were evaluated using protein denaturation assays. Supporting these findings, molecular docking studies were performed with lanosterol 14α-demethylase (CYP51A1), revealing significant binding affinities and non-covalent interactions, thereby corroborating the experimental data. The compounds met drug-likeness criteria and demonstrated favorable pharmacokinetic profiles in silico. Notably, compounds (III) and (V) exhibited binding affinities of −10.2 and −10.6 kcal/mol, respectively. During 100 ns molecular dynamics (MD) simulations, the RMSD, RMSF, radius of gyration, and solvent-accessible surface area (SASA) values remained within acceptable ranges. These compounds also formed a greater number of hydrogen bonds. Molecular Mechanics/Poisson–Boltzmann Surface Area (MM/PBSA) analyses of the 3-3LD6 and 5-3LD6 complexes showed that van der Waals, electrostatic, polar solvation, and SASA energy contributions positively influenced the binding free energies. Conclusions: Structure–activity relationship (SAR) analysis, together with in vitro and in silico studies, suggests that MDGP derivatives possess enhanced therapeutic potential and represent promising candidates for the development of new antimicrobial agents.
期刊介绍:
Russian Journal of Bioorganic Chemistry publishes reviews and original experimental and theoretical studies on the structure, function, structure–activity relationships, and synthesis of biopolymers, such as proteins, nucleic acids, polysaccharides, mixed biopolymers, and their complexes, and low-molecular-weight biologically active compounds (peptides, sugars, lipids, antibiotics, etc.). The journal also covers selected aspects of neuro- and immunochemistry, biotechnology, and ecology.