Alexander J Dear,Georg Meisl,Emil Axell,Xiaoting Yang,Risto Cukalevski,Thomas C T Michaels,Sara Linse,L Mahadevan
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引用次数: 0
摘要
利用综合速率定律分析蛋白质聚集的动力学实验,使我们对淀粉样变性疾病(如阿尔茨海默病和帕金森病)背后的基本化学机制的理解取得了许多进展。然而,生物学相关过程的描述可能需要过于复杂的速率方程,无法使用现有方法求解,从而阻碍了对这些过程的机制见解。一个重要的例子是含有多种淀粉样蛋白- β (a β)肽同种异体的环境中的共聚集,这可能在阿尔茨海默病的生物化学中起关键作用,但其机制尚不清楚。在这里,我们利用李对称的数学推导出一个适用于大多数似是而非的线性自组装反应的一般积分速率定律。我们将其与实验数据相结合,确定了生理上最丰富的Aβ同种异体:Aβ42、Aβ40、Aβ38和Aβ37肽的共聚集机制。我们发现Aβ42原纤维表面催化了共低聚物的形成,这加速了新的Aβ40、Aβ38和Aβ37原纤维的形成,同时抑制了新的Aβ42原纤维的二次成核。我们的一般积分速率定律的简单性、准确性和广泛的适用性将使更复杂的丝状自组装反应的动力学分析成为可能,无论是否有共聚集。
General integrated rate law for complex self-assembly reactions reveals the mechanism of amyloid-beta coaggregation.
Analyzing kinetic experiments on protein aggregation using integrated rate laws has led to numerous advances in our understanding of the fundamental chemical mechanisms behind amyloidogenic disorders such as Alzheimer's and Parkinson's diseases. However, the description of biologically relevant processes may require rate equations that are too complex to solve using existing methods, hindering mechanistic insights into these processes. An example of significance is coaggregation in environments containing multiple amyloid-beta (Aβ) peptide alloforms, which may play a crucial role in the biochemistry of Alzheimer's disease but whose mechanism is still poorly understood. Here, we use the mathematics of Lie symmetry to derive a general integrated rate law valid for most plausible linear self-assembly reactions. We use it in conjunction with experimental data to determine the mechanism of coaggregation of the most physiologically abundant Aβ alloforms: Aβ42, Aβ40, Aβ38 and Aβ37 peptides. We find that Aβ42 fibril surfaces catalyze the formation of co-oligomers, which accelerate new Aβ40, Aβ38 and Aβ37 fibril formation whilst inhibiting secondary nucleation of new Aβ42 fibrils. The simplicity, accuracy and broad applicability of our general integrated rate law will enable kinetic analysis of more complex filamentous self-assembly reactions, both with and without coaggregation.
期刊介绍:
Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions.
The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.