综合数据驱动的生物技术研究环境。

IF 3.6 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Rosalia Moreddu
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引用次数: 0

摘要

在过去的几十年里,生命科学经历了前所未有的数据积累,从基因组序列和蛋白质组学图谱到高含量成像、临床分析和用于研究的商业生物产品。传统的静态数据库在提供标准化和结构化的信息方面是无价的。然而,当涉及到促进探索性数据查询、实时查询、多维比较和动态可视化时,它们就不足了。集成数据驱动的研究环境旨在支持用户驱动的数据查询和可视化,为充分利用生物学研究中收集的大量异构数据流提供了有前途的新途径。本文讨论了交互和集成框架的潜力,强调了在生物技术研究中实施这种模式的重要性,同时介绍了最新的数据库设计,现代数据管理系统背后的技术选择以及多学科研究中的新需求。特别关注数据查询策略、用户界面设计和比较分析能力,以及数据密集型应用程序中的数据标准化和可伸缩性等挑战。然后,在体外研究细胞系选择的用户案例中,提出了沿着不同生命科学领域开发交互式数据环境的概念特征,以弥合研究数据生成,可操作的生物学见解,实验设计和临床相关性之间的差距。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Integrated data-driven biotechnology research environments.

Integrated data-driven biotechnology research environments.

Integrated data-driven biotechnology research environments.

In the past few decades, the life sciences have experienced an unprecedented accumulation of data, ranging from genomic sequences and proteomic profiles to heavy-content imaging, clinical assays, and commercial biological products for research. Traditional static databases have been invaluable in providing standardized and structured information. However, they fall short when it comes to facilitating exploratory data interrogation, real-time query, multidimensional comparison, and dynamic visualization. Integrated data-driven research environments aiming at supporting user-driven data queries and visualization offer promising new avenues for making the best use of the vast and heterogeneous data streams collected in biological research. This article discusses the potential of interactive and integrated frameworks, highlighting the importance of implementing this model in biotechnology research, while going through the state-of-the-art in database design, technical choices behind modern data management systems, and emerging needs in multidisciplinary research. Special attention is given to data interrogation strategies, user interface design, and comparative analysis capabilities, along with challenges such as data standardization and scalability in data-heavy applications. Conceptual features for developing interactive data environments along diverse life science domains are then presented in the user case of cell line selection for in vitro research to bridge the gap between research data generation, actionable biological insight, experimental design, and clinical relevance.

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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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