建立栗子DNA指纹图谱,用于栗子遗传多样性评估、品种精确鉴定和可追溯性研究。

IF 3.6 4区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Ivan Fruggiero, Alessandro Maisto, Sara Passaro, Domenico Gentile, Angelina Nunziata, Nunzio D'Agostino
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引用次数: 0

摘要

欧洲板栗(Castanea sativa Mill)。在生态和经济上都很重要,特别是在意大利、希腊、西班牙和土耳其等国家,它支持着农村经济和生态系统。准确的品种识别对管理栗树林至关重要,但传统方法的局限性阻碍了这一点,传统方法需要昂贵的专业知识,并且很难识别幼树、休眠树或接穗树。分子工具的最新进展,特别是通过竞争等位基因特异性PCR (KASP)技术鉴定的单核苷酸多态性(SNP)标记,已经改变了品种鉴定。为了利用这一潜力,我们开发了KASTRACKdb,这是一个欧洲板栗遗传指纹数据库,现在集成了150个板栗材料的基因型和表型数据。KASTRACKdb旨在将KASP分析结果转化为实用和可操作的见解,是品种鉴定和管理的有力工具。该数据库提供三种主要的查询模式,并为持续升级而设计,在栗树遗传多样性的编目中起着至关重要的作用,栗树具有广泛的地理分布和显著的遗传变异。这种多样性对保护和育种计划至关重要,可以实现精确的品种鉴定和可追溯性,以保护知识产权,验证真实性,并支持高价值品种的商业化。数据库URL: KASTRACKdb可在https://kastrack.crea.gov.it/kastrackdb/?lang=en上在线获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A new database of chestnut DNA fingerprints for genetic diversity assessment, precise varietal identification, and traceability.

A new database of chestnut DNA fingerprints for genetic diversity assessment, precise varietal identification, and traceability.

A new database of chestnut DNA fingerprints for genetic diversity assessment, precise varietal identification, and traceability.

A new database of chestnut DNA fingerprints for genetic diversity assessment, precise varietal identification, and traceability.

The European chestnut (Castanea sativa Mill., Fagaceae) is ecologically and economically important, particularly in countries like Italy, Greece, Spain, and Turkey, where it supports rural economies and ecosystems. Accurate varietal recognition is crucial for managing chestnut groves but is hindered by the limitations of traditional methods, which require costly expertise and struggle to identify young, dormant, or scion trees. Recent advances in molecular tools, particularly single nucleotide polymorphism (SNP) markers identified through Kompetitive Allele-Specific PCR (KASP) technology, have transformed cultivar identification. To harness this potential, we developed KASTRACKdb, a genetic fingerprinting database for European chestnut that now integrates genotypic and phenotypic data for 150 chestnut accessions. Designed to translate KASP analysis results into practical and actionable insights, KASTRACKdb serves as a powerful tool for cultivar identification and management. The database offers three primary query modes and is designed for continuous upgrades, serving a crucial role in cataloguing the genetic diversity of chestnut trees, characterized by broad geographic distributions and significant genetic variation. This diversity is critical for conservation and breeding programs, enabling precise varietal identification and traceability to protect intellectual property, verify authenticity, and support the commercialization of high-value cultivars. Database URL: KASTRACKdb is available online at https://kastrack.crea.gov.it/kastrackdb/?lang=en.

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来源期刊
Database: The Journal of Biological Databases and Curation
Database: The Journal of Biological Databases and Curation MATHEMATICAL & COMPUTATIONAL BIOLOGY-
CiteScore
9.00
自引率
3.40%
发文量
100
审稿时长
>12 weeks
期刊介绍: Huge volumes of primary data are archived in numerous open-access databases, and with new generation technologies becoming more common in laboratories, large datasets will become even more prevalent. The archiving, curation, analysis and interpretation of all of these data are a challenge. Database development and biocuration are at the forefront of the endeavor to make sense of this mounting deluge of data. Database: The Journal of Biological Databases and Curation provides an open access platform for the presentation of novel ideas in database research and biocuration, and aims to help strengthen the bridge between database developers, curators, and users.
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