{"title":"B9N9纳米细胞对多巴胺和酪胺神经递质感知的理论研究。","authors":"Ascharya Kumar Kar, Swetapadma Praharaj, Tarun Yadav, Somenath Garai, Dileep Kumar Gupta, Dibyaranjan Rout","doi":"10.1007/s00894-025-06478-6","DOIUrl":null,"url":null,"abstract":"<div><h3>Purpose</h3><p>The investigation concerns the first demonstration of employing the B<sub>9</sub>N<sub>9</sub> nanoring as an active material for sensing dopamine and tyramine neurotransmitters.</p><h3>Method</h3><p>The calculations for optimization and vibrational frequencies of B<sub>9</sub>N<sub>9</sub> ring, dopamine, and tyramine neurotransmitters have been executed by using density functional theory (DFT) available in the Gaussian09 suite. The standard functional (B3LYP) coupled with the basis set 6-311G(d, p) have been adopted for calculations. Natural bond orbital (NBO) analysis quantified charge transfer, while molecular electrostatic potential (MEP) mapping, electron localization function (ELF), reduced density gradient (RDG) analysis, and quantum theory of atoms in molecules (QTAIM) characterized intermolecular interactions.</p><h3>Results</h3><p>The responsiveness of B<sub>9</sub>N<sub>9</sub> ring towards the considered neurotransmitters is characterized thoroughly by the optimized electronic structures, energies, electronic, and other properties using density functional theory (B3LYP/6-311G(d, p)). The interaction of dopamine and tyramine governs through formation of the N-B dative bond in the most favorable configurations. The interaction energies for the most stable configurations of dopamine@B<sub>9</sub>N<sub>9</sub> and tyramine@B<sub>9</sub>N<sub>9</sub> complexes are found to be −22.11 and −21.49 kcal/mol, respectively, which show a significant interaction of neurotransmitters to nanoring and elucidate the adoption of B<sub>9</sub>N<sub>9</sub> ring in sensing applications for these neurotransmitters. The critical conventional electronic parameters, viz., HOMO, LUMO, Fermi energy, work function, and energy gap, are also computed, and the effect of an aqueous medium is investigated on these parameters. The ELF and RGD techniques are used to quantify the electron density distribution and explore the involved interactions. TD-DFT calculations are performed to simulate the UV-Vis spectra. Additionally, a quantum theory of atoms in molecules (QTAIM) analysis is conducted, which shows that dopamine@B<sub>9</sub>N<sub>9</sub> and tyramine@B<sub>9</sub>N<sub>9</sub> exhibit stronger hydrogen bond interactions, resulting in increased bond strengths.</p><h3>Conclusion</h3><p>B<sub>9</sub>N<sub>9</sub> nanoring shows significant interaction with both neurotransmitters and results in the change in the electronic properties helping in detection of both neurotransmitters.</p><h3>Graphical Abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 10","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Theoretical investigation on sensing of dopamine and tyramine neurotransmitters by the B9N9 nanoring\",\"authors\":\"Ascharya Kumar Kar, Swetapadma Praharaj, Tarun Yadav, Somenath Garai, Dileep Kumar Gupta, Dibyaranjan Rout\",\"doi\":\"10.1007/s00894-025-06478-6\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Purpose</h3><p>The investigation concerns the first demonstration of employing the B<sub>9</sub>N<sub>9</sub> nanoring as an active material for sensing dopamine and tyramine neurotransmitters.</p><h3>Method</h3><p>The calculations for optimization and vibrational frequencies of B<sub>9</sub>N<sub>9</sub> ring, dopamine, and tyramine neurotransmitters have been executed by using density functional theory (DFT) available in the Gaussian09 suite. The standard functional (B3LYP) coupled with the basis set 6-311G(d, p) have been adopted for calculations. Natural bond orbital (NBO) analysis quantified charge transfer, while molecular electrostatic potential (MEP) mapping, electron localization function (ELF), reduced density gradient (RDG) analysis, and quantum theory of atoms in molecules (QTAIM) characterized intermolecular interactions.</p><h3>Results</h3><p>The responsiveness of B<sub>9</sub>N<sub>9</sub> ring towards the considered neurotransmitters is characterized thoroughly by the optimized electronic structures, energies, electronic, and other properties using density functional theory (B3LYP/6-311G(d, p)). The interaction of dopamine and tyramine governs through formation of the N-B dative bond in the most favorable configurations. The interaction energies for the most stable configurations of dopamine@B<sub>9</sub>N<sub>9</sub> and tyramine@B<sub>9</sub>N<sub>9</sub> complexes are found to be −22.11 and −21.49 kcal/mol, respectively, which show a significant interaction of neurotransmitters to nanoring and elucidate the adoption of B<sub>9</sub>N<sub>9</sub> ring in sensing applications for these neurotransmitters. The critical conventional electronic parameters, viz., HOMO, LUMO, Fermi energy, work function, and energy gap, are also computed, and the effect of an aqueous medium is investigated on these parameters. The ELF and RGD techniques are used to quantify the electron density distribution and explore the involved interactions. TD-DFT calculations are performed to simulate the UV-Vis spectra. Additionally, a quantum theory of atoms in molecules (QTAIM) analysis is conducted, which shows that dopamine@B<sub>9</sub>N<sub>9</sub> and tyramine@B<sub>9</sub>N<sub>9</sub> exhibit stronger hydrogen bond interactions, resulting in increased bond strengths.</p><h3>Conclusion</h3><p>B<sub>9</sub>N<sub>9</sub> nanoring shows significant interaction with both neurotransmitters and results in the change in the electronic properties helping in detection of both neurotransmitters.</p><h3>Graphical Abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"31 10\",\"pages\":\"\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-09-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-025-06478-6\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-025-06478-6","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Theoretical investigation on sensing of dopamine and tyramine neurotransmitters by the B9N9 nanoring
Purpose
The investigation concerns the first demonstration of employing the B9N9 nanoring as an active material for sensing dopamine and tyramine neurotransmitters.
Method
The calculations for optimization and vibrational frequencies of B9N9 ring, dopamine, and tyramine neurotransmitters have been executed by using density functional theory (DFT) available in the Gaussian09 suite. The standard functional (B3LYP) coupled with the basis set 6-311G(d, p) have been adopted for calculations. Natural bond orbital (NBO) analysis quantified charge transfer, while molecular electrostatic potential (MEP) mapping, electron localization function (ELF), reduced density gradient (RDG) analysis, and quantum theory of atoms in molecules (QTAIM) characterized intermolecular interactions.
Results
The responsiveness of B9N9 ring towards the considered neurotransmitters is characterized thoroughly by the optimized electronic structures, energies, electronic, and other properties using density functional theory (B3LYP/6-311G(d, p)). The interaction of dopamine and tyramine governs through formation of the N-B dative bond in the most favorable configurations. The interaction energies for the most stable configurations of dopamine@B9N9 and tyramine@B9N9 complexes are found to be −22.11 and −21.49 kcal/mol, respectively, which show a significant interaction of neurotransmitters to nanoring and elucidate the adoption of B9N9 ring in sensing applications for these neurotransmitters. The critical conventional electronic parameters, viz., HOMO, LUMO, Fermi energy, work function, and energy gap, are also computed, and the effect of an aqueous medium is investigated on these parameters. The ELF and RGD techniques are used to quantify the electron density distribution and explore the involved interactions. TD-DFT calculations are performed to simulate the UV-Vis spectra. Additionally, a quantum theory of atoms in molecules (QTAIM) analysis is conducted, which shows that dopamine@B9N9 and tyramine@B9N9 exhibit stronger hydrogen bond interactions, resulting in increased bond strengths.
Conclusion
B9N9 nanoring shows significant interaction with both neurotransmitters and results in the change in the electronic properties helping in detection of both neurotransmitters.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.