使用定量昼夜节律偏差评分剖析人体组织中昼夜节律的遗传结构

IF 10.1 1区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Zheyu Li, Liang Chen
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引用次数: 0

摘要

昼夜节律影响各种生理和行为过程,包括睡眠、代谢和免疫反应。尽管生物钟的关键调节因素已经被确定,全基因组关联研究已经确定了一些与睡眠特征相关的遗传变异,但昼夜节律背后的遗传结构仍然不完全清楚。在这里,我们引入了昼夜节律偏差评分,这是一种在分子水平上测量昼夜节律中断的新型定量特征。该评分来源于人体组织中数千个昼夜节律基因的基因表达水平,有助于确定组织特异性遗传对昼夜节律的影响。我们的分析揭示了654个snp,我们将其命名为circ - snp,在表达水平上与全球昼夜节律中断相关。这些包括先前已知的与失眠、生物钟和昼夜节律有关的snp,以及增强对昼夜节律调节理解的新snp。大多数circ - snp与小肠和肾上腺的昼夜节律偏差评分显著相关,约19.4%位于X染色体上,突出了昼夜节律障碍的性别特异性差异。circ - snp通常位于转录本的3 '端附近,这表明它们具有潜在的调控作用,特别是在转录后过程中。我们将含有Circ-SNPs的基因命名为circ - regulatory,它们丰富了已知的昼夜节律特征。DrugBank的分析显示,在122种蛋白质编码circ调节因子中,有18种可以被163种现有药物靶向,其中包括6种被批准用于治疗睡眠障碍的药物。我们的发现强调了重新利用现有药物治疗昼夜节律相关疾病的潜力,并对昼夜节律和睡眠障碍的遗传成分提供了更深入的了解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Dissecting the genetic architecture of circadian rhythms in human tissues using a quantitative circadian deviation score
Circadian rhythms influence various physiological and behavioral processes, including sleep, metabolism, and immune response. Although key regulatory factors of biological clocks have been identified and genome-wide association studies have pinpointed some genetic variants linked to sleep traits, the genetic architecture underlying circadian rhythms remains incompletely understood. Here, we introduce the circadian deviation score, a novel quantitative trait that measures circadian disruption at the molecular level. Derived from gene expression levels of thousands of circadian genes across Human tissues, this score helps identify tissue-specific genetic influences on circadian rhythms. Our analysis reveals 654 SNPs, which we named Circ-SNPs, associated with global circadian disruption at the expression level. These include previously known SNPs Linked to insomnia, chronotype, and circadian rhythm, as well as new SNPs that enhance understanding of circadian regulation. Most Circ-SNPs exhibit significant associations with the circadian deviation score in the small intestine and adrenal gland, with about 19.4% situated on the X chromosome, highlighting sex-specific differences in circadian disorders. Circ-SNPs often reside near the 3′ end of transcripts, indicating their potential regulatory roles, particularly in post-transcriptional processes. The genes harboring Circ-SNPs, which we named Circ-regulators, are enriched for known circadian traits. DrugBank analysis shows 18 of 122 protein-coding Circ-regulators are targetable by 163 existing drugs, including six approved for sleep disorders. Our findings highlight the potential for repurposing existing drugs to treat circadian-related disorders and provide a deeper understanding of the genetic components of circadian rhythms and sleep disorders.
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来源期刊
Genome Biology
Genome Biology Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
21.00
自引率
3.30%
发文量
241
审稿时长
2 months
期刊介绍: Genome Biology stands as a premier platform for exceptional research across all domains of biology and biomedicine, explored through a genomic and post-genomic lens. With an impressive impact factor of 12.3 (2022),* the journal secures its position as the 3rd-ranked research journal in the Genetics and Heredity category and the 2nd-ranked research journal in the Biotechnology and Applied Microbiology category by Thomson Reuters. Notably, Genome Biology holds the distinction of being the highest-ranked open-access journal in this category. Our dedicated team of highly trained in-house Editors collaborates closely with our esteemed Editorial Board of international experts, ensuring the journal remains on the forefront of scientific advances and community standards. Regular engagement with researchers at conferences and institute visits underscores our commitment to staying abreast of the latest developments in the field.
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