{"title":"利用增强的蝠鲼基因选择阿尔茨海默病基因表达数据集改进机器学习检测阿尔茨海默病。","authors":"Zahraa Ahmed, Mesut Çevik","doi":"10.7717/peerj-cs.3064","DOIUrl":null,"url":null,"abstract":"<p><p>One of the most prominent neurodegenerative diseases globally is Alzheimer's disease (AD). The early diagnosis of AD is a challenging task due to complex pathophysiology caused by the presence and accumulation of neurofibrillary tangles and amyloid plaques. However, the late enriched understanding of the genetic underpinnings of AD has been made possible due to recent advancements in data mining analysis methods, machine learning, and microarray technologies. However, the \"curse of dimensionality\" caused by the high-dimensional microarray datasets impacts the accurate prediction of the disease due to issues of overfitting, bias, and high computational demands. To alleviate such an effect, this study proposes a gene selection approach based on the parameter-free and large-scale manta ray foraging optimization algorithm. Given the dimensional disparities and statistical relationship distributions of the six investigated datasets, in addition to four evaluated machine learning classifiers; the proposed Sign Random Mutation and Best Rank enhancements that substantially improved MRFO's exploration and exploitation contributed to efficient identification of relevant genes and to machine learning improved prediction accuracy.</p>","PeriodicalId":54224,"journal":{"name":"PeerJ Computer Science","volume":"11 ","pages":"e3064"},"PeriodicalIF":2.5000,"publicationDate":"2025-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12453835/pdf/","citationCount":"0","resultStr":"{\"title\":\"Improving machine learning detection of Alzheimer disease using enhanced manta ray gene selection of Alzheimer gene expression datasets.\",\"authors\":\"Zahraa Ahmed, Mesut Çevik\",\"doi\":\"10.7717/peerj-cs.3064\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>One of the most prominent neurodegenerative diseases globally is Alzheimer's disease (AD). The early diagnosis of AD is a challenging task due to complex pathophysiology caused by the presence and accumulation of neurofibrillary tangles and amyloid plaques. However, the late enriched understanding of the genetic underpinnings of AD has been made possible due to recent advancements in data mining analysis methods, machine learning, and microarray technologies. However, the \\\"curse of dimensionality\\\" caused by the high-dimensional microarray datasets impacts the accurate prediction of the disease due to issues of overfitting, bias, and high computational demands. To alleviate such an effect, this study proposes a gene selection approach based on the parameter-free and large-scale manta ray foraging optimization algorithm. Given the dimensional disparities and statistical relationship distributions of the six investigated datasets, in addition to four evaluated machine learning classifiers; the proposed Sign Random Mutation and Best Rank enhancements that substantially improved MRFO's exploration and exploitation contributed to efficient identification of relevant genes and to machine learning improved prediction accuracy.</p>\",\"PeriodicalId\":54224,\"journal\":{\"name\":\"PeerJ Computer Science\",\"volume\":\"11 \",\"pages\":\"e3064\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2025-08-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12453835/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"PeerJ Computer Science\",\"FirstCategoryId\":\"94\",\"ListUrlMain\":\"https://doi.org/10.7717/peerj-cs.3064\",\"RegionNum\":4,\"RegionCategory\":\"计算机科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"PeerJ Computer Science","FirstCategoryId":"94","ListUrlMain":"https://doi.org/10.7717/peerj-cs.3064","RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
Improving machine learning detection of Alzheimer disease using enhanced manta ray gene selection of Alzheimer gene expression datasets.
One of the most prominent neurodegenerative diseases globally is Alzheimer's disease (AD). The early diagnosis of AD is a challenging task due to complex pathophysiology caused by the presence and accumulation of neurofibrillary tangles and amyloid plaques. However, the late enriched understanding of the genetic underpinnings of AD has been made possible due to recent advancements in data mining analysis methods, machine learning, and microarray technologies. However, the "curse of dimensionality" caused by the high-dimensional microarray datasets impacts the accurate prediction of the disease due to issues of overfitting, bias, and high computational demands. To alleviate such an effect, this study proposes a gene selection approach based on the parameter-free and large-scale manta ray foraging optimization algorithm. Given the dimensional disparities and statistical relationship distributions of the six investigated datasets, in addition to four evaluated machine learning classifiers; the proposed Sign Random Mutation and Best Rank enhancements that substantially improved MRFO's exploration and exploitation contributed to efficient identification of relevant genes and to machine learning improved prediction accuracy.
期刊介绍:
PeerJ Computer Science is the new open access journal covering all subject areas in computer science, with the backing of a prestigious advisory board and more than 300 academic editors.