加速松弛引擎优化到最小能量路径†

IF 3.1 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Sandra Liz Simon, Nitin Kaistha and Vishal Agarwal
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引用次数: 0

摘要

在过去的几十年里,人们设计了几种新的算法来寻找势能面(PES)上的临界点和连接它们的最小能量路径。这使得我们对反应机制和潜在过程动力学的理解有了相当大的提高。这些方法隐含地依赖于PES上的能量和力的计算,这些计算通常是通过计算要求很高的基于波函数或密度函数的从头算方法获得的。为了降低计算成本,需要有效的优化算法。在此,我们提出了两种新的一阶优化算法:自适应加速松弛引擎(AARE),一种增强分子动力学(MD)方案,以及加速共轭梯度(Acc-CG)方法,一种传统共轭梯度(CG)算法的改进版本。我们证明了这些算法对二维和四维测试函数的无约束优化的有效性。此外,我们还展示了这些算法在二维分析势、七聚体岛跃迁、HCN/CNH异构化反应和酮-烯醇互变异构化反应上优化图像弹性带到最小能量路径的有效性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Accelerated relaxation engines for optimizing to a minimum energy path†

Accelerated relaxation engines for optimizing to a minimum energy path†

In the last few decades, several novel algorithms have been designed for finding critical points on a potential energy surface (PES) and the minimum energy paths connecting them. This has led to a considerable improvement in our understanding of reaction mechanisms and the kinetics of the underlying processes. These methods implicitly rely on computation of energy and forces on the PES, which are usually obtained via computationally demanding wave-function- or density-function-based ab initio methods. To mitigate the computational cost, efficient optimization algorithms are needed. Herein, we present two new first-order optimization algorithms: the adaptively accelerated relaxation engine (AARE), an enhanced molecular dynamics (MD) scheme, and the accelerated conjugate-gradient (Acc-CG) method, an improved version of the traditional conjugate gradient (CG) algorithm. We show the efficacy of these algorithms for unconstrained optimization on 2-dimensional and 4-dimensional test functions. Additionally, we also show the efficacy of these algorithms for optimizing an elastic band of images to the minimum energy path on 2-dimensional analytical potentials, heptamer island transitions, the HCN/CNH isomerization reaction, and the keto–enol tautomerization reaction.

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来源期刊
Reaction Chemistry & Engineering
Reaction Chemistry & Engineering Chemistry-Chemistry (miscellaneous)
CiteScore
6.60
自引率
7.70%
发文量
227
期刊介绍: Reaction Chemistry & Engineering is a new journal reporting cutting edge research into all aspects of making molecules for the benefit of fundamental research, applied processes and wider society. From fundamental, molecular-level chemistry to large scale chemical production, Reaction Chemistry & Engineering brings together communities of chemists and chemical engineers working to ensure the crucial role of reaction chemistry in today’s world.
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