一种新颖的字符串在后缀树所有内部节点下的线性索引方法。

IF 3.9 Q2 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Frontiers in bioinformatics Pub Date : 2025-09-04 eCollection Date: 2025-01-01 DOI:10.3389/fbinf.2025.1577324
Anas Al-Okaily, Abdelghani Tbakhi
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引用次数: 0

摘要

后缀树是弦学中的基本数据结构,在各个领域都有广泛的应用。在这项工作中,我们提出了两种线性时间算法,用于在后缀树的每个内部节点下索引字符串,同时保留跟踪不同内部节点之间的相似性和冗余的能力。这是通过派生自后缀树的新颖树结构以及新的索引概念实现的。所得到的索引在DNA序列分析和近似模式匹配等多个领域提供了实用的解决方案。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A novel linear indexing method for strings under all internal nodes in a suffix tree.

A novel linear indexing method for strings under all internal nodes in a suffix tree.

A novel linear indexing method for strings under all internal nodes in a suffix tree.

A novel linear indexing method for strings under all internal nodes in a suffix tree.

Suffix trees are fundamental data structures in stringology and have wide applications across various domains. In this work, we propose two linear-time algorithms for indexing strings under each internal node in a suffix tree while preserving the ability to track similarities and redundancies across different internal nodes. This is achieved through a novel tree structure derived from the suffix tree, along with new indexing concepts. The resulting indexes offer practical solutions in several areas, including DNA sequence analysis and approximate pattern matching.

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CiteScore
2.60
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