João P. C. Oliveira, Murillo H. Queiroz, Patricio F. Provasi, Roberto Rivelino
{"title":"基于核磁共振数据库的分子信息核化学描述:π共轭低聚物的表征","authors":"João P. C. Oliveira, Murillo H. Queiroz, Patricio F. Provasi, Roberto Rivelino","doi":"10.1007/s00894-025-06495-5","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Structure–property relationships of increasing systems, such as conjugated oligomers, atomic chains, and H-bonding networks, constitute a problem involving multiple variables in quantum chemical studies. Defining a single parameter that allows investigating different properties of these systems (or even those belonging to a specific chemical group) is not always a simple task. Thus, it is difficult to rationalize the evolution of molecular properties of increasing molecular systems, assigning relevant physicochemical information correlated to their size and structure. For conjugated oligomers, we have proposed a nuclear magnetic resonance (NMR)–based descriptor from the fluctuations of indirect spin–spin coupling constants (SSCCs) between two adjacent <sup>13</sup>C nuclei (<sup>1</sup><i>J</i><sub>CC</sub>) in the π-conjugated system. This parameter is called <i>J</i>-coupling alternation (JCA) and systematically gathers information from structural and electronic properties, allowing a rational evaluation of the molecular properties of growing oligomers. We employ JCA to obtain correlations with vibrational, electronic, and optical properties of conjugated oligomers, belonging to the groups of polypyrrole (PPy), polyfuran (PFu), polythiophene (PTh), and polyselenophene (PSe). This analysis yields excellent linear structure–property relationships, confirming the ability of JCA to characterize realistically different families of π-conjugated oligomers and providing a reliable parameter to design efficient molecular materials.</p><h3>Methods</h3><p>All the oligomers, PPy(<i>n</i>), PFu(<i>n</i>), PTh(<i>n</i>), and PSe(<i>n</i>), with <i>n</i> = 2, 3, 5, 7, 9, and 11, respectively, were fully optimized, without symmetry constraints, using density–functional theory (DFT) at the PBE0/6–311 + G(d,p) level. Next, the vibrational properties were computed within harmonic approximation and NMR spin–spin coupling constants using the GIAO method. Finally, optical properties were obtained via TD-DFT with the CAM-B3LYP/6–311 + G(d,p) method.</p></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"31 10","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2025-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A nuclear chemical descriptor based on NMR databases for molecular information: characterization of π-conjugated oligomers\",\"authors\":\"João P. C. Oliveira, Murillo H. Queiroz, Patricio F. Provasi, Roberto Rivelino\",\"doi\":\"10.1007/s00894-025-06495-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>Structure–property relationships of increasing systems, such as conjugated oligomers, atomic chains, and H-bonding networks, constitute a problem involving multiple variables in quantum chemical studies. Defining a single parameter that allows investigating different properties of these systems (or even those belonging to a specific chemical group) is not always a simple task. Thus, it is difficult to rationalize the evolution of molecular properties of increasing molecular systems, assigning relevant physicochemical information correlated to their size and structure. For conjugated oligomers, we have proposed a nuclear magnetic resonance (NMR)–based descriptor from the fluctuations of indirect spin–spin coupling constants (SSCCs) between two adjacent <sup>13</sup>C nuclei (<sup>1</sup><i>J</i><sub>CC</sub>) in the π-conjugated system. This parameter is called <i>J</i>-coupling alternation (JCA) and systematically gathers information from structural and electronic properties, allowing a rational evaluation of the molecular properties of growing oligomers. We employ JCA to obtain correlations with vibrational, electronic, and optical properties of conjugated oligomers, belonging to the groups of polypyrrole (PPy), polyfuran (PFu), polythiophene (PTh), and polyselenophene (PSe). This analysis yields excellent linear structure–property relationships, confirming the ability of JCA to characterize realistically different families of π-conjugated oligomers and providing a reliable parameter to design efficient molecular materials.</p><h3>Methods</h3><p>All the oligomers, PPy(<i>n</i>), PFu(<i>n</i>), PTh(<i>n</i>), and PSe(<i>n</i>), with <i>n</i> = 2, 3, 5, 7, 9, and 11, respectively, were fully optimized, without symmetry constraints, using density–functional theory (DFT) at the PBE0/6–311 + G(d,p) level. Next, the vibrational properties were computed within harmonic approximation and NMR spin–spin coupling constants using the GIAO method. 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A nuclear chemical descriptor based on NMR databases for molecular information: characterization of π-conjugated oligomers
Context
Structure–property relationships of increasing systems, such as conjugated oligomers, atomic chains, and H-bonding networks, constitute a problem involving multiple variables in quantum chemical studies. Defining a single parameter that allows investigating different properties of these systems (or even those belonging to a specific chemical group) is not always a simple task. Thus, it is difficult to rationalize the evolution of molecular properties of increasing molecular systems, assigning relevant physicochemical information correlated to their size and structure. For conjugated oligomers, we have proposed a nuclear magnetic resonance (NMR)–based descriptor from the fluctuations of indirect spin–spin coupling constants (SSCCs) between two adjacent 13C nuclei (1JCC) in the π-conjugated system. This parameter is called J-coupling alternation (JCA) and systematically gathers information from structural and electronic properties, allowing a rational evaluation of the molecular properties of growing oligomers. We employ JCA to obtain correlations with vibrational, electronic, and optical properties of conjugated oligomers, belonging to the groups of polypyrrole (PPy), polyfuran (PFu), polythiophene (PTh), and polyselenophene (PSe). This analysis yields excellent linear structure–property relationships, confirming the ability of JCA to characterize realistically different families of π-conjugated oligomers and providing a reliable parameter to design efficient molecular materials.
Methods
All the oligomers, PPy(n), PFu(n), PTh(n), and PSe(n), with n = 2, 3, 5, 7, 9, and 11, respectively, were fully optimized, without symmetry constraints, using density–functional theory (DFT) at the PBE0/6–311 + G(d,p) level. Next, the vibrational properties were computed within harmonic approximation and NMR spin–spin coupling constants using the GIAO method. Finally, optical properties were obtained via TD-DFT with the CAM-B3LYP/6–311 + G(d,p) method.
期刊介绍:
The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling.
Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry.
Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.