基于核磁共振数据库的分子信息核化学描述:π共轭低聚物的表征

IF 2.5 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
João P. C. Oliveira, Murillo H. Queiroz, Patricio F. Provasi, Roberto Rivelino
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引用次数: 0

摘要

在量子化学研究中,共轭低聚物、原子链和氢键网络等增加系统的结构-性质关系构成了一个涉及多个变量的问题。定义一个参数来研究这些系统(甚至是属于特定化学组的系统)的不同属性并不总是一项简单的任务。因此,很难将越来越多的分子系统的分子性质演变合理化,分配与它们的大小和结构相关的物理化学信息。对于共轭低聚物,我们从π共轭体系中相邻的两个13C核(1JCC)之间的间接自旋耦合常数(SSCCs)波动中提出了一个基于核磁共振(NMR)的描述子。这个参数被称为j偶联交替(JCA),它系统地收集结构和电子性质的信息,从而可以合理地评估生长中的低聚物的分子性质。我们使用JCA来获得属于聚吡咯(PPy),聚呋喃(PFu),聚噻吩(PTh)和聚硒烯(PSe)基团的共轭低聚物的振动,电子和光学性质的相关性。该分析得到了良好的线性结构-性能关系,证实了JCA能够真实地表征不同π共轭低聚物族,并为设计高效分子材料提供了可靠的参数。方法利用密度泛函理论(DFT)在PBE0/6-311 + G(d,p)水平上,对n分别为2、3、5、7、9和11的聚物PPy(n)、PFu(n)、PTh(n)和PSe(n)进行不对称约束的充分优化。其次,利用GIAO方法在谐波近似和核磁共振自旋-自旋耦合常数范围内计算了其振动特性。最后,利用CAM-B3LYP/ 6-311 + G(d,p)方法,通过TD-DFT获得了光学性质。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A nuclear chemical descriptor based on NMR databases for molecular information: characterization of π-conjugated oligomers

Context

Structure–property relationships of increasing systems, such as conjugated oligomers, atomic chains, and H-bonding networks, constitute a problem involving multiple variables in quantum chemical studies. Defining a single parameter that allows investigating different properties of these systems (or even those belonging to a specific chemical group) is not always a simple task. Thus, it is difficult to rationalize the evolution of molecular properties of increasing molecular systems, assigning relevant physicochemical information correlated to their size and structure. For conjugated oligomers, we have proposed a nuclear magnetic resonance (NMR)–based descriptor from the fluctuations of indirect spin–spin coupling constants (SSCCs) between two adjacent 13C nuclei (1JCC) in the π-conjugated system. This parameter is called J-coupling alternation (JCA) and systematically gathers information from structural and electronic properties, allowing a rational evaluation of the molecular properties of growing oligomers. We employ JCA to obtain correlations with vibrational, electronic, and optical properties of conjugated oligomers, belonging to the groups of polypyrrole (PPy), polyfuran (PFu), polythiophene (PTh), and polyselenophene (PSe). This analysis yields excellent linear structure–property relationships, confirming the ability of JCA to characterize realistically different families of π-conjugated oligomers and providing a reliable parameter to design efficient molecular materials.

Methods

All the oligomers, PPy(n), PFu(n), PTh(n), and PSe(n), with n = 2, 3, 5, 7, 9, and 11, respectively, were fully optimized, without symmetry constraints, using density–functional theory (DFT) at the PBE0/6–311 + G(d,p) level. Next, the vibrational properties were computed within harmonic approximation and NMR spin–spin coupling constants using the GIAO method. Finally, optical properties were obtained via TD-DFT with the CAM-B3LYP/6–311 + G(d,p) method.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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