Manikandan Anandhan , Vijayaraj Venkatachalam , D. Karthikeyan , Sebastian Anand , A.R. Prabakaran , Mysoon M. Al-Ansari , Sandhanasamy Devanesan
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Synthesis, characterization and biological evaluation of a novel chalcone derivative: Spectroscopic, DFT, docking, ADMET and MD Studies
E)-3-(2-hydroxy-6-methoxyphenyl)-1-(1OH-Pheno thiazin-2-yl) prop 2-en-1-one (3HM1P) was synthesized by condensing 2-acetyl phenothiazine and 2-hydroxy-3-methoxy benzaldehyde. The molecular structure of 3HM1P was confirmed by analysis and well supported by FT-IR spectrum. The compound's geometry was optimized using the B3LYP method at the 6–311++G(d,p) level, and theoretical calculations were compared to experimental data. Linear optical absorption spectra were analyzed to study solvent effects on 3HM1P, with HOMO-LUMO analysis revealing a highest energy gap of 3.27 eV in hexane. Molecular electrostatic potential (MEP) analysis identified electron-rich and electron-deficient regions, crucial for enzyme interactions. Natural bond orbital (NBO) analysis indicated a maximum stabilization energy of 392.59 kJ/mol from π→π∗ orbital overlap. Antibacterial potential was assessed through molecular docking studies against the 2JIU protein, supported by early drug-likeness evaluations and ADMET virtual screening. Molecular dynamics simulations confirmed successful docking of 3HM1P-3JUV, while normal mode analysis indicated stable and flexible molecular mobility at the binding site, with a low eigenvalue of 2.6383 × 10−04.
期刊介绍:
The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design.
As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.