{"title":"金簇作为亚硝基抗癌药物创新载体的潜力:NBO和QTAIM分析的详细观点","authors":"Fatemeh Shams , Sharieh Hosseini , Kambiz Larijani , Marjan Jebeli Javan , Sepideh Ketabi","doi":"10.1016/j.jmgm.2025.109174","DOIUrl":null,"url":null,"abstract":"<div><div>This study employed density functional theory (DFT) calculations to explore the interactions between nitrosourea (Nu) and small gold clusters, specifically Au4 and Au6. The nature of these interactions was further clarified using the quantum theory of atoms in molecules (QTAIM) and natural bond orbital (NBO) analyses. The results reveal that the Nu drug interacts strongly with the gold clusters. Among the conformers studied, the most stable Au4 complex exhibits a binding energy of −23.31 kcal/mol. In comparison, the most stable Au6 conformer, Nu/Au6 (1), shows binding energies of −9.54 kcal/mol in the gas phase and −9.57 kcal/mol in aqueous solution. Importantly, the electronic structure of the Aun clusters undergoes significant changes upon interaction with the Nu molecule. The decrease in the energy gap of the stable complexes serves as a chemical indicator of Nu adsorption. Furthermore, the dipole moments of the complexes increase by 3 %–36 % in aqueous environments compared to the gas phase. Analysis of the Au–O bond in the Nu complexes indicates that the bond is strongest in the Nu–Au4 (2) complex relative to the others studied. Consequently, Nu/Aun complexes show great potential as carriers for delivering the Nu molecule, owing to their strong adsorption energies and good solubility in polar solvents. These findings could contribute to future advancements in nanomedicine.</div></div>","PeriodicalId":16361,"journal":{"name":"Journal of molecular graphics & modelling","volume":"142 ","pages":"Article 109174"},"PeriodicalIF":3.0000,"publicationDate":"2025-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The potential of gold clusters as an innovative carrier for the nitrosoureas anticancer drug: Detailed view of NBO and QTAIM analyses\",\"authors\":\"Fatemeh Shams , Sharieh Hosseini , Kambiz Larijani , Marjan Jebeli Javan , Sepideh Ketabi\",\"doi\":\"10.1016/j.jmgm.2025.109174\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>This study employed density functional theory (DFT) calculations to explore the interactions between nitrosourea (Nu) and small gold clusters, specifically Au4 and Au6. The nature of these interactions was further clarified using the quantum theory of atoms in molecules (QTAIM) and natural bond orbital (NBO) analyses. The results reveal that the Nu drug interacts strongly with the gold clusters. Among the conformers studied, the most stable Au4 complex exhibits a binding energy of −23.31 kcal/mol. In comparison, the most stable Au6 conformer, Nu/Au6 (1), shows binding energies of −9.54 kcal/mol in the gas phase and −9.57 kcal/mol in aqueous solution. Importantly, the electronic structure of the Aun clusters undergoes significant changes upon interaction with the Nu molecule. The decrease in the energy gap of the stable complexes serves as a chemical indicator of Nu adsorption. Furthermore, the dipole moments of the complexes increase by 3 %–36 % in aqueous environments compared to the gas phase. Analysis of the Au–O bond in the Nu complexes indicates that the bond is strongest in the Nu–Au4 (2) complex relative to the others studied. Consequently, Nu/Aun complexes show great potential as carriers for delivering the Nu molecule, owing to their strong adsorption energies and good solubility in polar solvents. These findings could contribute to future advancements in nanomedicine.</div></div>\",\"PeriodicalId\":16361,\"journal\":{\"name\":\"Journal of molecular graphics & modelling\",\"volume\":\"142 \",\"pages\":\"Article 109174\"},\"PeriodicalIF\":3.0000,\"publicationDate\":\"2025-09-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of molecular graphics & modelling\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1093326325002347\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of molecular graphics & modelling","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1093326325002347","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
The potential of gold clusters as an innovative carrier for the nitrosoureas anticancer drug: Detailed view of NBO and QTAIM analyses
This study employed density functional theory (DFT) calculations to explore the interactions between nitrosourea (Nu) and small gold clusters, specifically Au4 and Au6. The nature of these interactions was further clarified using the quantum theory of atoms in molecules (QTAIM) and natural bond orbital (NBO) analyses. The results reveal that the Nu drug interacts strongly with the gold clusters. Among the conformers studied, the most stable Au4 complex exhibits a binding energy of −23.31 kcal/mol. In comparison, the most stable Au6 conformer, Nu/Au6 (1), shows binding energies of −9.54 kcal/mol in the gas phase and −9.57 kcal/mol in aqueous solution. Importantly, the electronic structure of the Aun clusters undergoes significant changes upon interaction with the Nu molecule. The decrease in the energy gap of the stable complexes serves as a chemical indicator of Nu adsorption. Furthermore, the dipole moments of the complexes increase by 3 %–36 % in aqueous environments compared to the gas phase. Analysis of the Au–O bond in the Nu complexes indicates that the bond is strongest in the Nu–Au4 (2) complex relative to the others studied. Consequently, Nu/Aun complexes show great potential as carriers for delivering the Nu molecule, owing to their strong adsorption energies and good solubility in polar solvents. These findings could contribute to future advancements in nanomedicine.
期刊介绍:
The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design.
As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.