Ambritha Balasundaram, Sakshi Manoj Kamath, D Thirumal Kumar, George Priya Doss C
{"title":"利用网络药理学、分子对接、综合计算等方法研究大车前草和车前草在非小细胞肺癌中的作用机制","authors":"Ambritha Balasundaram, Sakshi Manoj Kamath, D Thirumal Kumar, George Priya Doss C","doi":"10.1016/bs.apcsb.2025.02.002","DOIUrl":null,"url":null,"abstract":"<p><p>Non-small cell lung cancer (NSCLC) is the predominant form of lung cancer, associated with high morbidity and mortality rates. Current treatments, including surgical resection, chemotherapy, targeted therapy, and radiation, offer limited improvement in prognosis, with a low five-year survival rate. Thus, innovative therapeutic approaches are critically needed. The study utilized a network pharmacology approach to explore the phytocompounds of P. major and P. lanceolata targeting key genes in NSCLC. It involved collecting compounds of P. major and P. lanceolata using IMPPAT 2.0 and literature, screening drug-likeliness compounds using SWISS ADME, target prediction for bioactive compounds using SWISS targets, screening NSCLC-related targets using Genecards and OMIM, gene function annotation using DAVID GO and KEGG analysis, constructing a \"Compounds-Targets-Pathway\" network and analyzing protein interaction to identify hub genes using STRING and Cytoscape software, conducting molecular docking using Autodocktools and Autodock Vina, and lastly performing molecular dynamics simulations using GROMACS. Functional enrichment GO analysis and KEGG pathway analysis indicated that the primary mechanism of action of P. major and P. lanceolata phytocompounds in NSCLC treatment involves regulating cellular metabolism, survival, and cell cycle progression through various signaling pathways, including PKB, RA, PTP, hormone-mediated signaling, and PI3K. Molecular docking studies identified eight bioactive compounds with strong affinity for EGFR and three for MET, suggesting potential treatments for NSCLC with EGFR and MET mutations. Molecular dynamics simulations revealed that apigenin-7-O-glucoside is a promising therapeutic option for NSCLC with EGFR mutations, while scutellarein is more effective for MET mutations. The research provides the scientific basis for developing quality control standards and therapeutic applications, particularly for treating EGFR and MET mutations in NSCLC. It also highlights the need for further investigation into using P. major and P. lanceolata phytocompounds in NSCLC treatment.</p>","PeriodicalId":7376,"journal":{"name":"Advances in protein chemistry and structural biology","volume":"147 ","pages":"207-240"},"PeriodicalIF":0.0000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Investigating the mechanisms of Plantago major and Plantago lanceolata in non-small cell lung cancer: A study of their bioactive phytocompounds through network pharmacology, molecular docking, and integrated computational approaches.\",\"authors\":\"Ambritha Balasundaram, Sakshi Manoj Kamath, D Thirumal Kumar, George Priya Doss C\",\"doi\":\"10.1016/bs.apcsb.2025.02.002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Non-small cell lung cancer (NSCLC) is the predominant form of lung cancer, associated with high morbidity and mortality rates. Current treatments, including surgical resection, chemotherapy, targeted therapy, and radiation, offer limited improvement in prognosis, with a low five-year survival rate. Thus, innovative therapeutic approaches are critically needed. The study utilized a network pharmacology approach to explore the phytocompounds of P. major and P. lanceolata targeting key genes in NSCLC. It involved collecting compounds of P. major and P. lanceolata using IMPPAT 2.0 and literature, screening drug-likeliness compounds using SWISS ADME, target prediction for bioactive compounds using SWISS targets, screening NSCLC-related targets using Genecards and OMIM, gene function annotation using DAVID GO and KEGG analysis, constructing a \\\"Compounds-Targets-Pathway\\\" network and analyzing protein interaction to identify hub genes using STRING and Cytoscape software, conducting molecular docking using Autodocktools and Autodock Vina, and lastly performing molecular dynamics simulations using GROMACS. 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引用次数: 0
摘要
非小细胞肺癌(NSCLC)是肺癌的主要形式,具有很高的发病率和死亡率。目前的治疗方法,包括手术切除、化疗、靶向治疗和放疗,对预后的改善有限,5年生存率低。因此,迫切需要创新的治疗方法。本研究利用网络药理学方法,探索了大杉木和杉木靶向非小细胞肺癌关键基因的植物化合物。使用IMPPAT 2.0和文献收集大杉木和杉木化合物,使用SWISS ADME筛选药物可能性化合物,使用SWISS靶标预测生物活性化合物,使用Genecards和OMIM筛选nsclc相关靶标,使用DAVID GO和KEGG分析进行基因功能注释,构建“化合物-靶标-途径”网络,使用STRING和Cytoscape软件分析蛋白质相互作用以确定枢纽基因。使用Autodocktools和Autodock Vina进行分子对接,最后使用GROMACS进行分子动力学模拟。功能富集GO分析和KEGG通路分析表明,大杉木和杉木植物化合物在NSCLC治疗中的主要作用机制是通过多种信号通路,包括PKB、RA、PTP、激素介导的信号通路和PI3K,调节细胞代谢、存活和细胞周期进程。分子对接研究确定了8种与EGFR和MET具有强亲和力的生物活性化合物,为EGFR和MET突变的NSCLC提供了潜在的治疗方法。分子动力学模拟显示,芹菜素-7- o -葡萄糖苷是EGFR突变的NSCLC的一种有希望的治疗选择,而芥蓝素对MET突变更有效。该研究为制定质量控制标准和治疗应用,特别是治疗非小细胞肺癌的EGFR和MET突变提供了科学依据。这也强调了在非小细胞肺癌治疗中使用大杉木和杉木植物化合物的必要性。
Investigating the mechanisms of Plantago major and Plantago lanceolata in non-small cell lung cancer: A study of their bioactive phytocompounds through network pharmacology, molecular docking, and integrated computational approaches.
Non-small cell lung cancer (NSCLC) is the predominant form of lung cancer, associated with high morbidity and mortality rates. Current treatments, including surgical resection, chemotherapy, targeted therapy, and radiation, offer limited improvement in prognosis, with a low five-year survival rate. Thus, innovative therapeutic approaches are critically needed. The study utilized a network pharmacology approach to explore the phytocompounds of P. major and P. lanceolata targeting key genes in NSCLC. It involved collecting compounds of P. major and P. lanceolata using IMPPAT 2.0 and literature, screening drug-likeliness compounds using SWISS ADME, target prediction for bioactive compounds using SWISS targets, screening NSCLC-related targets using Genecards and OMIM, gene function annotation using DAVID GO and KEGG analysis, constructing a "Compounds-Targets-Pathway" network and analyzing protein interaction to identify hub genes using STRING and Cytoscape software, conducting molecular docking using Autodocktools and Autodock Vina, and lastly performing molecular dynamics simulations using GROMACS. Functional enrichment GO analysis and KEGG pathway analysis indicated that the primary mechanism of action of P. major and P. lanceolata phytocompounds in NSCLC treatment involves regulating cellular metabolism, survival, and cell cycle progression through various signaling pathways, including PKB, RA, PTP, hormone-mediated signaling, and PI3K. Molecular docking studies identified eight bioactive compounds with strong affinity for EGFR and three for MET, suggesting potential treatments for NSCLC with EGFR and MET mutations. Molecular dynamics simulations revealed that apigenin-7-O-glucoside is a promising therapeutic option for NSCLC with EGFR mutations, while scutellarein is more effective for MET mutations. The research provides the scientific basis for developing quality control standards and therapeutic applications, particularly for treating EGFR and MET mutations in NSCLC. It also highlights the need for further investigation into using P. major and P. lanceolata phytocompounds in NSCLC treatment.
期刊介绍:
Published continuously since 1944, The Advances in Protein Chemistry and Structural Biology series has been the essential resource for protein chemists. Each volume brings forth new information about protocols and analysis of proteins. Each thematically organized volume is guest edited by leading experts in a broad range of protein-related topics.