Yeliz Demir , Halil Şenol , Orhan Uluçay , Şeyma Ateşoğlu S. , Feyzi Sinan Tokalı
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Compounds <strong>12</strong> (AChE, <em>K</em><sub>i</sub> = 32.83 ± 4.45 nM) and <strong>6</strong> (BChE, <em>K</em><sub>i</sub> = 30.13 ± 5.78 nM) exhibited the highest inhibitory activities without notable cytotoxicity at their effective concentrations. Kinetic analyses revealed competitive inhibition. Computational studies demonstrated that morpholine tertiary amine groups played a pivotal role in anchoring the ligands via persistent cation–π and hydrogen-bond interactions with key active site residues. <em>In silico</em> ADME analysis indicated that most of the synthesized compounds possess favorable pharmacokinetic properties. This combined <em>in vitro</em> and <em>in silico</em> study identifies compounds <strong>6</strong> and <strong>12</strong> as promising lead structures for cholinesterase inhibition, highlighting the critical contribution of tertiary amine moieties to binding affinity and selectivity.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"120 ","pages":"Article 108683"},"PeriodicalIF":3.1000,"publicationDate":"2025-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Morpholine-modified thiosemicarbazones and thiazolidin-4-ones against Alzheimer’s key enzymes: From synthesis to inhibition\",\"authors\":\"Yeliz Demir , Halil Şenol , Orhan Uluçay , Şeyma Ateşoğlu S. , Feyzi Sinan Tokalı\",\"doi\":\"10.1016/j.compbiolchem.2025.108683\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Inhibition of acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) is a key therapeutic approach in the management of Alzheimer’s disease and other neurodegenerative disorders. A novel series of phenolic Mannich base-derived thiosemicarbazones and their cyclized thiazolidin-4-one analogs incorporating morpholine moieties were synthesized and characterized. Enzyme inhibition kinetics were evaluated against AChE and BChE, with cytotoxicity assessed on the BEAS-2B cell line. The most potent inhibitors were further examined via molecular docking, MM-GBSA binding free energy decomposition, and 250 ns molecular dynamics (MD) simulations to elucidate their binding mechanisms and stability. Compounds <strong>12</strong> (AChE, <em>K</em><sub>i</sub> = 32.83 ± 4.45 nM) and <strong>6</strong> (BChE, <em>K</em><sub>i</sub> = 30.13 ± 5.78 nM) exhibited the highest inhibitory activities without notable cytotoxicity at their effective concentrations. Kinetic analyses revealed competitive inhibition. 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引用次数: 0
摘要
抑制乙酰胆碱酯酶(AChE)和丁基胆碱酯酶(BChE)是治疗阿尔茨海默病和其他神经退行性疾病的关键治疗方法。合成并表征了一系列由酚类曼尼希碱衍生的硫代氨基脲及其含morpholine基团的环噻唑烷-4- 1类似物。在BEAS-2B细胞株上评价酶对AChE和BChE的抑制动力学和细胞毒性。通过分子对接、MM-GBSA结合自由能分解和250 ns分子动力学(MD)模拟来进一步研究最有效的抑制剂,以阐明其结合机制和稳定性。化合物12 (AChE, Ki = 32.83 ± 4.45 nM)和6 (BChE, Ki = 30.13 ± 5.78 nM)在其有效浓度下表现出最高的抑制活性,但没有显著的细胞毒性。动力学分析显示竞争性抑制。计算研究表明,通过与关键活性位点残基的持续阳离子-π和氢键相互作用,啉叔胺基团在锚定配体中发挥了关键作用。计算机ADME分析表明,大多数合成的化合物具有良好的药代动力学性质。这项结合体外和硅片的研究确定了化合物6和12是抑制胆碱酯酶的有希望的先导结构,突出了叔胺部分对结合亲和力和选择性的关键贡献。
Morpholine-modified thiosemicarbazones and thiazolidin-4-ones against Alzheimer’s key enzymes: From synthesis to inhibition
Inhibition of acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) is a key therapeutic approach in the management of Alzheimer’s disease and other neurodegenerative disorders. A novel series of phenolic Mannich base-derived thiosemicarbazones and their cyclized thiazolidin-4-one analogs incorporating morpholine moieties were synthesized and characterized. Enzyme inhibition kinetics were evaluated against AChE and BChE, with cytotoxicity assessed on the BEAS-2B cell line. The most potent inhibitors were further examined via molecular docking, MM-GBSA binding free energy decomposition, and 250 ns molecular dynamics (MD) simulations to elucidate their binding mechanisms and stability. Compounds 12 (AChE, Ki = 32.83 ± 4.45 nM) and 6 (BChE, Ki = 30.13 ± 5.78 nM) exhibited the highest inhibitory activities without notable cytotoxicity at their effective concentrations. Kinetic analyses revealed competitive inhibition. Computational studies demonstrated that morpholine tertiary amine groups played a pivotal role in anchoring the ligands via persistent cation–π and hydrogen-bond interactions with key active site residues. In silico ADME analysis indicated that most of the synthesized compounds possess favorable pharmacokinetic properties. This combined in vitro and in silico study identifies compounds 6 and 12 as promising lead structures for cholinesterase inhibition, highlighting the critical contribution of tertiary amine moieties to binding affinity and selectivity.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.