Yan Hong Ng , Muhamad Imam Muhajir , Khairul Azreena Bakar , Rani Maharani , Unang Supratman , Jalifah Latip , Murni Nazira Sarian , Su Datt Lam , Shevin Rizal Feroz
{"title":"异guvacine酯前药作为潜在抗癫痫药物的设计、合成和计算评价","authors":"Yan Hong Ng , Muhamad Imam Muhajir , Khairul Azreena Bakar , Rani Maharani , Unang Supratman , Jalifah Latip , Murni Nazira Sarian , Su Datt Lam , Shevin Rizal Feroz","doi":"10.1016/j.compbiolchem.2025.108678","DOIUrl":null,"url":null,"abstract":"<div><div>Epilepsy, a neurological disorder affecting millions worldwide, has driven the development of various antiseizure medications (ASMs). Isoguvacine (IGV), a potent and selective agonist of the GABA<sub>A</sub> receptor (GABA<sub>A</sub>R), has shown potential in the treatment of epilepsy and other neurological disorders. However, its low blood-brain barrier permeability impairs its ability to act effectively within the central nervous system. To address this limitation, two novel ester derivatives of IGV, <strong>E7</strong> and <strong>E14</strong>, were synthesized via Steglich esterification and evaluated through an integrated computational framework comprising density functional theory (DFT) calculations, molecular docking, molecular dynamics (MD) simulations, and <em>in silico</em> ADMET predictions. DFT analysis revealed that esterification significantly modified the electronic properties of IGV, with <strong>E14</strong> exhibiting the highest polarizability (225.895 ų) and smallest energy gap (–0.155 eV), indicative of enhanced reactivity. Molecular docking demonstrated that GABA (–8.46 kcal/mol) and IGV (–8.35 kcal/mol) exhibit similar binding affinity and complex stability with GABA<sub>A</sub>R, supporting the reliability of our computational approach. MD simulations further confirmed the stability of these complexes, where lower RMSD, RMSF, and Rg values indicated that binding of GABA and IGV did not induce significant conformational changes in the overall receptor structure. Moreover, the derivatives were projected to exhibit optimal intestinal absorption (>90%), oral bioavailability, as well as favorable safety profiles with minimal interaction risks and non-carcinogenic properties. Collectively, these <em>in silico</em> findings highlight the potential of ester prodrug design to overcome the central pharmacokinetic limitations of IGV, with <strong>E14</strong> emerging as the most promising ASM candidate for further experimental development in epilepsy therapy. Beyond identifying therapeutic advantages of <strong>E14</strong>, this study also underscores the broader value of integrated computational approaches as powerful and predictive tools in early-stage drug discovery for neurological disorders.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"120 ","pages":"Article 108678"},"PeriodicalIF":3.1000,"publicationDate":"2025-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Design, synthesis, and computational evaluation of ester prodrugs of isoguvacine as potential antiseizure medications\",\"authors\":\"Yan Hong Ng , Muhamad Imam Muhajir , Khairul Azreena Bakar , Rani Maharani , Unang Supratman , Jalifah Latip , Murni Nazira Sarian , Su Datt Lam , Shevin Rizal Feroz\",\"doi\":\"10.1016/j.compbiolchem.2025.108678\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Epilepsy, a neurological disorder affecting millions worldwide, has driven the development of various antiseizure medications (ASMs). Isoguvacine (IGV), a potent and selective agonist of the GABA<sub>A</sub> receptor (GABA<sub>A</sub>R), has shown potential in the treatment of epilepsy and other neurological disorders. However, its low blood-brain barrier permeability impairs its ability to act effectively within the central nervous system. To address this limitation, two novel ester derivatives of IGV, <strong>E7</strong> and <strong>E14</strong>, were synthesized via Steglich esterification and evaluated through an integrated computational framework comprising density functional theory (DFT) calculations, molecular docking, molecular dynamics (MD) simulations, and <em>in silico</em> ADMET predictions. DFT analysis revealed that esterification significantly modified the electronic properties of IGV, with <strong>E14</strong> exhibiting the highest polarizability (225.895 ų) and smallest energy gap (–0.155 eV), indicative of enhanced reactivity. Molecular docking demonstrated that GABA (–8.46 kcal/mol) and IGV (–8.35 kcal/mol) exhibit similar binding affinity and complex stability with GABA<sub>A</sub>R, supporting the reliability of our computational approach. MD simulations further confirmed the stability of these complexes, where lower RMSD, RMSF, and Rg values indicated that binding of GABA and IGV did not induce significant conformational changes in the overall receptor structure. Moreover, the derivatives were projected to exhibit optimal intestinal absorption (>90%), oral bioavailability, as well as favorable safety profiles with minimal interaction risks and non-carcinogenic properties. Collectively, these <em>in silico</em> findings highlight the potential of ester prodrug design to overcome the central pharmacokinetic limitations of IGV, with <strong>E14</strong> emerging as the most promising ASM candidate for further experimental development in epilepsy therapy. Beyond identifying therapeutic advantages of <strong>E14</strong>, this study also underscores the broader value of integrated computational approaches as powerful and predictive tools in early-stage drug discovery for neurological disorders.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"120 \",\"pages\":\"Article 108678\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-09-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927125003391\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927125003391","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
Design, synthesis, and computational evaluation of ester prodrugs of isoguvacine as potential antiseizure medications
Epilepsy, a neurological disorder affecting millions worldwide, has driven the development of various antiseizure medications (ASMs). Isoguvacine (IGV), a potent and selective agonist of the GABAA receptor (GABAAR), has shown potential in the treatment of epilepsy and other neurological disorders. However, its low blood-brain barrier permeability impairs its ability to act effectively within the central nervous system. To address this limitation, two novel ester derivatives of IGV, E7 and E14, were synthesized via Steglich esterification and evaluated through an integrated computational framework comprising density functional theory (DFT) calculations, molecular docking, molecular dynamics (MD) simulations, and in silico ADMET predictions. DFT analysis revealed that esterification significantly modified the electronic properties of IGV, with E14 exhibiting the highest polarizability (225.895 ų) and smallest energy gap (–0.155 eV), indicative of enhanced reactivity. Molecular docking demonstrated that GABA (–8.46 kcal/mol) and IGV (–8.35 kcal/mol) exhibit similar binding affinity and complex stability with GABAAR, supporting the reliability of our computational approach. MD simulations further confirmed the stability of these complexes, where lower RMSD, RMSF, and Rg values indicated that binding of GABA and IGV did not induce significant conformational changes in the overall receptor structure. Moreover, the derivatives were projected to exhibit optimal intestinal absorption (>90%), oral bioavailability, as well as favorable safety profiles with minimal interaction risks and non-carcinogenic properties. Collectively, these in silico findings highlight the potential of ester prodrug design to overcome the central pharmacokinetic limitations of IGV, with E14 emerging as the most promising ASM candidate for further experimental development in epilepsy therapy. Beyond identifying therapeutic advantages of E14, this study also underscores the broader value of integrated computational approaches as powerful and predictive tools in early-stage drug discovery for neurological disorders.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.