异guvacine酯前药作为潜在抗癫痫药物的设计、合成和计算评价

IF 3.1 4区 生物学 Q2 BIOLOGY
Yan Hong Ng , Muhamad Imam Muhajir , Khairul Azreena Bakar , Rani Maharani , Unang Supratman , Jalifah Latip , Murni Nazira Sarian , Su Datt Lam , Shevin Rizal Feroz
{"title":"异guvacine酯前药作为潜在抗癫痫药物的设计、合成和计算评价","authors":"Yan Hong Ng ,&nbsp;Muhamad Imam Muhajir ,&nbsp;Khairul Azreena Bakar ,&nbsp;Rani Maharani ,&nbsp;Unang Supratman ,&nbsp;Jalifah Latip ,&nbsp;Murni Nazira Sarian ,&nbsp;Su Datt Lam ,&nbsp;Shevin Rizal Feroz","doi":"10.1016/j.compbiolchem.2025.108678","DOIUrl":null,"url":null,"abstract":"<div><div>Epilepsy, a neurological disorder affecting millions worldwide, has driven the development of various antiseizure medications (ASMs). Isoguvacine (IGV), a potent and selective agonist of the GABA<sub>A</sub> receptor (GABA<sub>A</sub>R), has shown potential in the treatment of epilepsy and other neurological disorders. However, its low blood-brain barrier permeability impairs its ability to act effectively within the central nervous system. To address this limitation, two novel ester derivatives of IGV, <strong>E7</strong> and <strong>E14</strong>, were synthesized via Steglich esterification and evaluated through an integrated computational framework comprising density functional theory (DFT) calculations, molecular docking, molecular dynamics (MD) simulations, and <em>in silico</em> ADMET predictions. DFT analysis revealed that esterification significantly modified the electronic properties of IGV, with <strong>E14</strong> exhibiting the highest polarizability (225.895 ų) and smallest energy gap (–0.155 eV), indicative of enhanced reactivity. Molecular docking demonstrated that GABA (–8.46 kcal/mol) and IGV (–8.35 kcal/mol) exhibit similar binding affinity and complex stability with GABA<sub>A</sub>R, supporting the reliability of our computational approach. MD simulations further confirmed the stability of these complexes, where lower RMSD, RMSF, and Rg values indicated that binding of GABA and IGV did not induce significant conformational changes in the overall receptor structure. Moreover, the derivatives were projected to exhibit optimal intestinal absorption (&gt;90%), oral bioavailability, as well as favorable safety profiles with minimal interaction risks and non-carcinogenic properties. Collectively, these <em>in silico</em> findings highlight the potential of ester prodrug design to overcome the central pharmacokinetic limitations of IGV, with <strong>E14</strong> emerging as the most promising ASM candidate for further experimental development in epilepsy therapy. Beyond identifying therapeutic advantages of <strong>E14</strong>, this study also underscores the broader value of integrated computational approaches as powerful and predictive tools in early-stage drug discovery for neurological disorders.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"120 ","pages":"Article 108678"},"PeriodicalIF":3.1000,"publicationDate":"2025-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Design, synthesis, and computational evaluation of ester prodrugs of isoguvacine as potential antiseizure medications\",\"authors\":\"Yan Hong Ng ,&nbsp;Muhamad Imam Muhajir ,&nbsp;Khairul Azreena Bakar ,&nbsp;Rani Maharani ,&nbsp;Unang Supratman ,&nbsp;Jalifah Latip ,&nbsp;Murni Nazira Sarian ,&nbsp;Su Datt Lam ,&nbsp;Shevin Rizal Feroz\",\"doi\":\"10.1016/j.compbiolchem.2025.108678\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Epilepsy, a neurological disorder affecting millions worldwide, has driven the development of various antiseizure medications (ASMs). Isoguvacine (IGV), a potent and selective agonist of the GABA<sub>A</sub> receptor (GABA<sub>A</sub>R), has shown potential in the treatment of epilepsy and other neurological disorders. However, its low blood-brain barrier permeability impairs its ability to act effectively within the central nervous system. To address this limitation, two novel ester derivatives of IGV, <strong>E7</strong> and <strong>E14</strong>, were synthesized via Steglich esterification and evaluated through an integrated computational framework comprising density functional theory (DFT) calculations, molecular docking, molecular dynamics (MD) simulations, and <em>in silico</em> ADMET predictions. DFT analysis revealed that esterification significantly modified the electronic properties of IGV, with <strong>E14</strong> exhibiting the highest polarizability (225.895 ų) and smallest energy gap (–0.155 eV), indicative of enhanced reactivity. Molecular docking demonstrated that GABA (–8.46 kcal/mol) and IGV (–8.35 kcal/mol) exhibit similar binding affinity and complex stability with GABA<sub>A</sub>R, supporting the reliability of our computational approach. MD simulations further confirmed the stability of these complexes, where lower RMSD, RMSF, and Rg values indicated that binding of GABA and IGV did not induce significant conformational changes in the overall receptor structure. Moreover, the derivatives were projected to exhibit optimal intestinal absorption (&gt;90%), oral bioavailability, as well as favorable safety profiles with minimal interaction risks and non-carcinogenic properties. Collectively, these <em>in silico</em> findings highlight the potential of ester prodrug design to overcome the central pharmacokinetic limitations of IGV, with <strong>E14</strong> emerging as the most promising ASM candidate for further experimental development in epilepsy therapy. Beyond identifying therapeutic advantages of <strong>E14</strong>, this study also underscores the broader value of integrated computational approaches as powerful and predictive tools in early-stage drug discovery for neurological disorders.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"120 \",\"pages\":\"Article 108678\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-09-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927125003391\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927125003391","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

癫痫是一种影响全球数百万人的神经系统疾病,它推动了各种抗癫痫药物(asm)的发展。异guvacine (IGV)是GABAA受体(GABAAR)的一种强效和选择性激动剂,在治疗癫痫和其他神经系统疾病方面显示出潜力。然而,其低血脑屏障渗透性削弱了其在中枢神经系统内有效作用的能力。为了解决这一限制,研究人员通过Steglich酯化法合成了IGV的两种新型酯衍生物E7和E14,并通过包括密度泛函数理论(DFT)计算、分子对接、分子动力学(MD)模拟和计算机ADMET预测在内的综合计算框架进行了评估。DFT分析显示,酯化反应显著改变了IGV的电子性质,其中E14的极化率最高(225.895 ų),能隙最小(-0.155 eV),表明反应性增强。分子对接表明,GABA(-8.46 kcal/mol)和IGV(-8.35 kcal/mol)与GABAAR具有相似的结合亲和力和复合物稳定性,支持了我们计算方法的可靠性。MD模拟进一步证实了这些复合物的稳定性,较低的RMSD, RMSF和Rg值表明GABA和IGV的结合不会引起整体受体结构的显着构象变化。此外,该衍生物预计具有最佳的肠道吸收(>90%),口服生物利用度以及良好的安全性,具有最小的相互作用风险和非致癌性。总的来说,这些计算机研究结果强调了酯前药设计的潜力,以克服IGV的中心药代动力学限制,E14成为最有希望的ASM候选物,用于癫痫治疗的进一步实验开发。除了确定E14的治疗优势外,本研究还强调了集成计算方法作为神经系统疾病早期药物发现的强大预测工具的更广泛价值。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Design, synthesis, and computational evaluation of ester prodrugs of isoguvacine as potential antiseizure medications
Epilepsy, a neurological disorder affecting millions worldwide, has driven the development of various antiseizure medications (ASMs). Isoguvacine (IGV), a potent and selective agonist of the GABAA receptor (GABAAR), has shown potential in the treatment of epilepsy and other neurological disorders. However, its low blood-brain barrier permeability impairs its ability to act effectively within the central nervous system. To address this limitation, two novel ester derivatives of IGV, E7 and E14, were synthesized via Steglich esterification and evaluated through an integrated computational framework comprising density functional theory (DFT) calculations, molecular docking, molecular dynamics (MD) simulations, and in silico ADMET predictions. DFT analysis revealed that esterification significantly modified the electronic properties of IGV, with E14 exhibiting the highest polarizability (225.895 ų) and smallest energy gap (–0.155 eV), indicative of enhanced reactivity. Molecular docking demonstrated that GABA (–8.46 kcal/mol) and IGV (–8.35 kcal/mol) exhibit similar binding affinity and complex stability with GABAAR, supporting the reliability of our computational approach. MD simulations further confirmed the stability of these complexes, where lower RMSD, RMSF, and Rg values indicated that binding of GABA and IGV did not induce significant conformational changes in the overall receptor structure. Moreover, the derivatives were projected to exhibit optimal intestinal absorption (>90%), oral bioavailability, as well as favorable safety profiles with minimal interaction risks and non-carcinogenic properties. Collectively, these in silico findings highlight the potential of ester prodrug design to overcome the central pharmacokinetic limitations of IGV, with E14 emerging as the most promising ASM candidate for further experimental development in epilepsy therapy. Beyond identifying therapeutic advantages of E14, this study also underscores the broader value of integrated computational approaches as powerful and predictive tools in early-stage drug discovery for neurological disorders.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Computational Biology and Chemistry
Computational Biology and Chemistry 生物-计算机:跨学科应用
CiteScore
6.10
自引率
3.20%
发文量
142
审稿时长
24 days
期刊介绍: Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered. Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered. Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信