2017-2022年韩国某三级医院呼吸道标本分离非结核分枝杆菌的种类分布

IF 3.8 2区 生物学 Q2 MICROBIOLOGY
Tae Yeul Kim, Jeong Su Park, Minhee Kang, Byung Woo Jhun, Hee Jae Huh, Nam Yong Lee, Sue Shin
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引用次数: 0

摘要

非结核分枝杆菌(NTM)的临床相关性和耐药模式因物种而异。本研究调查了2017 - 2022年韩国某三级医院呼吸道标本分离的NTM的物种分布。对提交抗酸杆菌培养的呼吸道标本的实验室数据进行回顾性分析。采用线探针法鉴定NTM分离株,对在种或复合体水平上无法鉴定的NTM分离株进行16S rRNA、rpoB和hsp65基因的多基因测序。在所有分枝杆菌分离株中,NTM所占比例呈上升趋势,从2017年的87.4%上升至2022年的93.3%。最常见的8种分别是鸟分枝杆菌(61.9%)、脓肿分枝杆菌(14.2%)、福氏分枝杆菌(8.4%)、gordonae(5.3%)、类人猿分枝杆菌(3.4%)、甘肃分枝杆菌(1.9%)、地分枝杆菌(1.5%)和龟分枝杆菌(1.2%),占NTM分离株总数的97.7%。其余分离物(2.3%,n = 169) 161株,分属24种和群,多数比例低于0.1%。尽管进行了多基因测序,但仍无法在物种或群体水平上识别的8株分离株中有2株进行了全基因组测序,这表明它们可能代表新的分枝杆菌物种。本研究为从韩国呼吸道标本中分离出的NTM物种的分布,特别是罕见的物种提供了有价值的见解。这些发现可能有助于优化诊断策略和选择适当的治疗方案。鉴于非结核分枝杆菌(NTM)种类的临床相关性和耐药模式存在显著差异,了解其地理分布对于选择适当的治疗方案和改善患者预后至关重要。本研究调查了2017 - 2022年韩国某三级医院呼吸道标本分离的NTM物种分布。我们的研究结果显示NTM的比例越来越高,以禽分枝杆菌复合体和脓肿分枝杆菌为主。此外,我们确定了24个很少遇到的物种和群体,以及两个可能代表新型分枝杆菌物种的菌株。我们的研究促进了对韩国NTM流行病学发展的理解,有助于优化诊断策略和改善患者管理。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Species distribution of nontuberculous mycobacteria isolated from respiratory specimens at a tertiary care hospital in South Korea, 2017-2022.

The clinical relevance and drug resistance patterns of nontuberculous mycobacteria (NTM) vary by species. This study investigated the species distribution of NTM isolated from respiratory specimens at a tertiary care hospital in South Korea from 2017 to 2022. A retrospective analysis was conducted on laboratory data from respiratory specimens submitted for acid-fast bacilli culture. NTM isolates were identified using a line probe assay, and those unidentifiable at the species or complex level underwent multigene sequencing of the 16S rRNA, rpoB, and hsp65 genes. Among all mycobacterial isolates, the proportion of NTM showed an increasing trend, rising from 87.4% in 2017 to 93.3% in 2022. The eight most common species were M. avium complex (61.9%), M. abscessus (14.2%), M. fortuitum complex (8.4%), M. gordonae (5.3%), M. simiae complex (3.4%), M. kansasii complex (1.9%), M. terrae complex (1.5%), and M. chelonae (1.2%), accounting for 97.7% of all NTM isolates. Among the remaining isolates (2.3%, n = 169), 161 were classified into 24 species and groups, the majority with proportions below 0.1%. Two of the eight isolates that could not be identified at the species or group level despite multigene sequencing underwent whole-genome sequencing, which suggested they likely represent novel Mycobacterium species. This study provides valuable insights into the distribution of NTM species, particularly rarely encountered species, isolated from respiratory specimens in South Korea. These findings may aid in optimizing diagnostic strategies and selecting appropriate treatment options.IMPORTANCEGiven the significant variations in clinical relevance and drug resistance patterns among nontuberculous mycobacteria (NTM) species, understanding their geographic distribution is essential for selecting appropriate treatment options and improving patient outcomes. This study investigated the distribution of NTM species isolated from respiratory specimens at a tertiary care hospital in South Korea from 2017 to 2022. Our findings revealed an increasing proportion of NTM, with M. avium complex and M. abscessus remaining predominant. Additionally, we identified 24 rarely encountered species and groups, along with two strains that likely represent novel Mycobacterium species. Our study advances the understanding of the evolving NTM epidemiology in South Korea, contributing to the optimization of diagnostic strategies and improvement of patient management.

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来源期刊
Microbiology spectrum
Microbiology spectrum Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.20
自引率
5.40%
发文量
1800
期刊介绍: Microbiology Spectrum publishes commissioned review articles on topics in microbiology representing ten content areas: Archaea; Food Microbiology; Bacterial Genetics, Cell Biology, and Physiology; Clinical Microbiology; Environmental Microbiology and Ecology; Eukaryotic Microbes; Genomics, Computational, and Synthetic Microbiology; Immunology; Pathogenesis; and Virology. Reviews are interrelated, with each review linking to other related content. A large board of Microbiology Spectrum editors aids in the development of topics for potential reviews and in the identification of an editor, or editors, who shepherd each collection.
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