{"title":"利用自然杀伤细胞相关基因促进肺腺癌的预后和治疗进展:生存和免疫治疗结果的预测模型。","authors":"Minqi Zhu, Likang Wang, Fang Chen","doi":"10.21037/tcr-2025-380","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>Lung adenocarcinoma (LUAD), the most common subtype of non-small cell lung cancer (NSCLC), is characterized by high mortality rates and complex immune evasion mechanisms. Natural killer (NK) cells play a crucial role in tumor immune surveillance, with their activity regulated by specific genes. Recently, biomarkers derived from NK cell-related genes have garnered significant attention for their potential in predicting cancer prognosis. This study aimed to evaluate the clinical utility of a prognostic model based on NK cell-related genes in patients with LUAD.</p><p><strong>Methods: </strong>In this study, gene expression data and clinical information from LUAD patients were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, and differentially expressed genes associated with natural killer cells (DENKCRGs) were identified. A prognostic risk score model was developed using least absolute shrinkage and selection operator (LASSO) regression and Cox regression analysis. The model's performance was subsequently validated through Kaplan-Meier survival curves, receiver operating characteristic (ROC) curves, enrichment analysis, and immune infiltration analysis. Additionally, its predictive capacity for immune therapy response and drug sensitivity was evaluated.</p><p><strong>Results: </strong>A total of 493 LUAD patient datasets were retrieved from TCGA, 857 from the GEO database, and 244 NK cell-related genes were identified based on prior studies. The filtered data were then partitioned into training and testing sets. Through LASSO regression and Cox regression analysis, eight genes (<i>PAK1</i>, <i>PLCG2</i>, <i>SHC3</i>, <i>SHC1</i>, <i>TOX</i>, <i>ARRB2</i>, <i>SERPINB4</i>, and <i>NLRC4</i>) were identified as significantly associated with prognosis. A prognostic model based on these genes was developed, categorizing patients into high-risk and low-risk groups. Strong predictive performance was observed in the training set, testing set, and GEO dataset. Immune infiltration analysis revealed notable differences in immune cell distribution and immune response intensity between the high-risk and low-risk groups, with low-risk patients demonstrating greater responsiveness to immunotherapy. Furthermore, drug sensitivity analysis indicated that the high-risk group exhibited increased sensitivity to Axitinib, while the low-risk group showed higher responsiveness to drugs such as cisplatin.</p><p><strong>Conclusions: </strong>The prognostic model developed in this study, based on NK cell-related genes, demonstrates considerable value in assessing the prognosis of LUAD. It not only serves as a predictor of patient survival but also provides a theoretical foundation for personalized immunotherapy and drug selection. Future research should focus on further validating the clinical applicability of this model and exploring its potential in the context of immunotherapy and targeted therapies.</p>","PeriodicalId":23216,"journal":{"name":"Translational cancer research","volume":"14 8","pages":"4598-4620"},"PeriodicalIF":1.7000,"publicationDate":"2025-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12432624/pdf/","citationCount":"0","resultStr":"{\"title\":\"Harnessing natural killer cell-related genes for prognostic and therapeutic advances in lung adenocarcinoma: a predictive model for survival and immunotherapy outcomes.\",\"authors\":\"Minqi Zhu, Likang Wang, Fang Chen\",\"doi\":\"10.21037/tcr-2025-380\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Lung adenocarcinoma (LUAD), the most common subtype of non-small cell lung cancer (NSCLC), is characterized by high mortality rates and complex immune evasion mechanisms. Natural killer (NK) cells play a crucial role in tumor immune surveillance, with their activity regulated by specific genes. Recently, biomarkers derived from NK cell-related genes have garnered significant attention for their potential in predicting cancer prognosis. This study aimed to evaluate the clinical utility of a prognostic model based on NK cell-related genes in patients with LUAD.</p><p><strong>Methods: </strong>In this study, gene expression data and clinical information from LUAD patients were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, and differentially expressed genes associated with natural killer cells (DENKCRGs) were identified. A prognostic risk score model was developed using least absolute shrinkage and selection operator (LASSO) regression and Cox regression analysis. The model's performance was subsequently validated through Kaplan-Meier survival curves, receiver operating characteristic (ROC) curves, enrichment analysis, and immune infiltration analysis. Additionally, its predictive capacity for immune therapy response and drug sensitivity was evaluated.</p><p><strong>Results: </strong>A total of 493 LUAD patient datasets were retrieved from TCGA, 857 from the GEO database, and 244 NK cell-related genes were identified based on prior studies. The filtered data were then partitioned into training and testing sets. Through LASSO regression and Cox regression analysis, eight genes (<i>PAK1</i>, <i>PLCG2</i>, <i>SHC3</i>, <i>SHC1</i>, <i>TOX</i>, <i>ARRB2</i>, <i>SERPINB4</i>, and <i>NLRC4</i>) were identified as significantly associated with prognosis. A prognostic model based on these genes was developed, categorizing patients into high-risk and low-risk groups. Strong predictive performance was observed in the training set, testing set, and GEO dataset. Immune infiltration analysis revealed notable differences in immune cell distribution and immune response intensity between the high-risk and low-risk groups, with low-risk patients demonstrating greater responsiveness to immunotherapy. Furthermore, drug sensitivity analysis indicated that the high-risk group exhibited increased sensitivity to Axitinib, while the low-risk group showed higher responsiveness to drugs such as cisplatin.</p><p><strong>Conclusions: </strong>The prognostic model developed in this study, based on NK cell-related genes, demonstrates considerable value in assessing the prognosis of LUAD. It not only serves as a predictor of patient survival but also provides a theoretical foundation for personalized immunotherapy and drug selection. Future research should focus on further validating the clinical applicability of this model and exploring its potential in the context of immunotherapy and targeted therapies.</p>\",\"PeriodicalId\":23216,\"journal\":{\"name\":\"Translational cancer research\",\"volume\":\"14 8\",\"pages\":\"4598-4620\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2025-08-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12432624/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Translational cancer research\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.21037/tcr-2025-380\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/8/27 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q4\",\"JCRName\":\"ONCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Translational cancer research","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.21037/tcr-2025-380","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/8/27 0:00:00","PubModel":"Epub","JCR":"Q4","JCRName":"ONCOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
背景:肺腺癌(LUAD)是非小细胞肺癌(NSCLC)中最常见的亚型,具有死亡率高、免疫逃避机制复杂的特点。自然杀伤细胞(NK)在肿瘤免疫监视中起着至关重要的作用,其活性受特定基因的调控。最近,来自NK细胞相关基因的生物标志物因其预测癌症预后的潜力而受到了极大的关注。本研究旨在评估基于NK细胞相关基因的LUAD患者预后模型的临床应用价值。方法:本研究从The Cancer Genome Atlas (TCGA)和gene expression Omnibus (GEO)数据库中获取LUAD患者的基因表达数据和临床信息,鉴定出与自然杀伤细胞(natural killer cells, DENKCRGs)相关的差异表达基因。采用最小绝对收缩和选择算子(LASSO)回归和Cox回归分析建立预后风险评分模型。随后通过Kaplan-Meier生存曲线、受试者工作特征(ROC)曲线、富集分析和免疫浸润分析验证模型的性能。此外,还评估了其对免疫治疗反应和药物敏感性的预测能力。结果:共从TCGA检索到493个LUAD患者数据集,从GEO数据库检索到857个数据集,根据前期研究鉴定出244个NK细胞相关基因。然后将过滤后的数据划分为训练集和测试集。通过LASSO回归和Cox回归分析,发现PAK1、PLCG2、SHC3、SHC1、TOX、ARRB2、SERPINB4、NLRC4 8个基因与预后有显著相关性。基于这些基因的预后模型被开发出来,将患者分为高风险和低风险组。在训练集、测试集和GEO数据集中观察到较强的预测性能。免疫浸润分析显示,高危组和低危组在免疫细胞分布和免疫反应强度上存在显著差异,低危组患者对免疫治疗的反应性更强。此外,药物敏感性分析表明,高危组对阿西替尼的敏感性增加,而低危组对顺铂等药物的反应性更高。结论:本研究建立的基于NK细胞相关基因的预后模型在评估LUAD的预后方面具有相当的价值。它不仅可以作为患者生存的预测指标,还可以为个性化免疫治疗和药物选择提供理论基础。未来的研究应进一步验证该模型的临床适用性,并探索其在免疫治疗和靶向治疗方面的潜力。
Harnessing natural killer cell-related genes for prognostic and therapeutic advances in lung adenocarcinoma: a predictive model for survival and immunotherapy outcomes.
Background: Lung adenocarcinoma (LUAD), the most common subtype of non-small cell lung cancer (NSCLC), is characterized by high mortality rates and complex immune evasion mechanisms. Natural killer (NK) cells play a crucial role in tumor immune surveillance, with their activity regulated by specific genes. Recently, biomarkers derived from NK cell-related genes have garnered significant attention for their potential in predicting cancer prognosis. This study aimed to evaluate the clinical utility of a prognostic model based on NK cell-related genes in patients with LUAD.
Methods: In this study, gene expression data and clinical information from LUAD patients were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases, and differentially expressed genes associated with natural killer cells (DENKCRGs) were identified. A prognostic risk score model was developed using least absolute shrinkage and selection operator (LASSO) regression and Cox regression analysis. The model's performance was subsequently validated through Kaplan-Meier survival curves, receiver operating characteristic (ROC) curves, enrichment analysis, and immune infiltration analysis. Additionally, its predictive capacity for immune therapy response and drug sensitivity was evaluated.
Results: A total of 493 LUAD patient datasets were retrieved from TCGA, 857 from the GEO database, and 244 NK cell-related genes were identified based on prior studies. The filtered data were then partitioned into training and testing sets. Through LASSO regression and Cox regression analysis, eight genes (PAK1, PLCG2, SHC3, SHC1, TOX, ARRB2, SERPINB4, and NLRC4) were identified as significantly associated with prognosis. A prognostic model based on these genes was developed, categorizing patients into high-risk and low-risk groups. Strong predictive performance was observed in the training set, testing set, and GEO dataset. Immune infiltration analysis revealed notable differences in immune cell distribution and immune response intensity between the high-risk and low-risk groups, with low-risk patients demonstrating greater responsiveness to immunotherapy. Furthermore, drug sensitivity analysis indicated that the high-risk group exhibited increased sensitivity to Axitinib, while the low-risk group showed higher responsiveness to drugs such as cisplatin.
Conclusions: The prognostic model developed in this study, based on NK cell-related genes, demonstrates considerable value in assessing the prognosis of LUAD. It not only serves as a predictor of patient survival but also provides a theoretical foundation for personalized immunotherapy and drug selection. Future research should focus on further validating the clinical applicability of this model and exploring its potential in the context of immunotherapy and targeted therapies.
期刊介绍:
Translational Cancer Research (Transl Cancer Res TCR; Print ISSN: 2218-676X; Online ISSN 2219-6803; http://tcr.amegroups.com/) is an Open Access, peer-reviewed journal, indexed in Science Citation Index Expanded (SCIE). TCR publishes laboratory studies of novel therapeutic interventions as well as clinical trials which evaluate new treatment paradigms for cancer; results of novel research investigations which bridge the laboratory and clinical settings including risk assessment, cellular and molecular characterization, prevention, detection, diagnosis and treatment of human cancers with the overall goal of improving the clinical care of cancer patients. The focus of TCR is original, peer-reviewed, science-based research that successfully advances clinical medicine toward the goal of improving patients'' quality of life. The editors and an international advisory group of scientists and clinician-scientists as well as other experts will hold TCR articles to the high-quality standards. We accept Original Articles as well as Review Articles, Editorials and Brief Articles.