{"title":"邻近组织作为诊断窗口:胰腺导管腺癌放射学检测中的邻近效应","authors":"Seyed Masoud Rezaeijo , Alireza Eftekhar , Saleh Rouhi , Behnaz Keshavarzi , Zahra Mohammadi , Leila Alipour Firouzabad , Maryam Abidi , Salimeh Ghafeli","doi":"10.1016/j.cmpb.2025.109056","DOIUrl":null,"url":null,"abstract":"<div><h3>Objective</h3><div>This study introduces a pioneering, tumor-independent diagnostic approach for Pancreatic Ductal Adenocarcinoma (PDAC), utilizing radiomic and deep features from non-tumorous CT regions to detect subtle, systemic tissue alterations beyond conventional imaging limits.</div></div><div><h3>Materials and Methods</h3><div>A retrospective cohort of 1263 patients was analyzed, including both PDAC and non-PDAC cases, with anatomical segmentation masks encompassing veins, arteries, pancreatic parenchyma, pancreatic duct, and common bile duct. Radiomic features (n = 107 per region) were extracted using the PyRadiomics library, while deep features were derived from a 3D convolutional autoencoder trained on cropped and normalized anatomical volumes. Three analytical approaches were implemented: (1) healthy tissue analysis using features exclusively from non-tumorous structures, (2) row-wise label combination treating each anatomical label as a separate instance, and (3) column-wise patient-level fusion aggregating multi-tissue features. Each dataset underwent multiple feature selection methods and was classified using ensemble and neural machine learning models. SHAP and t-SNE analyses were conducted for model interpretability and visualization.</div></div><div><h3>Results</h3><div>Radiomic analysis of non-tumorous anatomical regions demonstrated high diagnostic performance for PDAC detection, particularly in the pancreatic duct and parenchyma. Among the three approaches, patient-level feature aggregation (Approach 3) achieved the best results, with an F1-score of 88.33 % and AUC of 97.98 %. In contrast, deep features exhibited limited discriminative power when used in isolation but improved moderately in fusion strategies. SHAP and t-SNE analyses confirmed that tissue-wide radiomic signatures serve as robust biomarkers, supporting the hypothesis that PDAC induces detectable changes beyond the tumor region. These findings validate a novel, tumor-independent diagnostic framework for early PDAC classification.</div></div><div><h3>Conclusions</h3><div>Non-tumorous anatomical structures encode valuable diagnostic information for PDAC. Systemic feature integration provides a robust, interpretable framework for early detection, particularly in radiologically occult or ambiguous cases.</div></div>","PeriodicalId":10624,"journal":{"name":"Computer methods and programs in biomedicine","volume":"272 ","pages":"Article 109056"},"PeriodicalIF":4.8000,"publicationDate":"2025-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Neighboring tissues as diagnostic windows: Neighborhood effects in radiomic detection of pancreatic ductal adenocarcinoma\",\"authors\":\"Seyed Masoud Rezaeijo , Alireza Eftekhar , Saleh Rouhi , Behnaz Keshavarzi , Zahra Mohammadi , Leila Alipour Firouzabad , Maryam Abidi , Salimeh Ghafeli\",\"doi\":\"10.1016/j.cmpb.2025.109056\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Objective</h3><div>This study introduces a pioneering, tumor-independent diagnostic approach for Pancreatic Ductal Adenocarcinoma (PDAC), utilizing radiomic and deep features from non-tumorous CT regions to detect subtle, systemic tissue alterations beyond conventional imaging limits.</div></div><div><h3>Materials and Methods</h3><div>A retrospective cohort of 1263 patients was analyzed, including both PDAC and non-PDAC cases, with anatomical segmentation masks encompassing veins, arteries, pancreatic parenchyma, pancreatic duct, and common bile duct. Radiomic features (n = 107 per region) were extracted using the PyRadiomics library, while deep features were derived from a 3D convolutional autoencoder trained on cropped and normalized anatomical volumes. Three analytical approaches were implemented: (1) healthy tissue analysis using features exclusively from non-tumorous structures, (2) row-wise label combination treating each anatomical label as a separate instance, and (3) column-wise patient-level fusion aggregating multi-tissue features. Each dataset underwent multiple feature selection methods and was classified using ensemble and neural machine learning models. SHAP and t-SNE analyses were conducted for model interpretability and visualization.</div></div><div><h3>Results</h3><div>Radiomic analysis of non-tumorous anatomical regions demonstrated high diagnostic performance for PDAC detection, particularly in the pancreatic duct and parenchyma. Among the three approaches, patient-level feature aggregation (Approach 3) achieved the best results, with an F1-score of 88.33 % and AUC of 97.98 %. In contrast, deep features exhibited limited discriminative power when used in isolation but improved moderately in fusion strategies. SHAP and t-SNE analyses confirmed that tissue-wide radiomic signatures serve as robust biomarkers, supporting the hypothesis that PDAC induces detectable changes beyond the tumor region. These findings validate a novel, tumor-independent diagnostic framework for early PDAC classification.</div></div><div><h3>Conclusions</h3><div>Non-tumorous anatomical structures encode valuable diagnostic information for PDAC. Systemic feature integration provides a robust, interpretable framework for early detection, particularly in radiologically occult or ambiguous cases.</div></div>\",\"PeriodicalId\":10624,\"journal\":{\"name\":\"Computer methods and programs in biomedicine\",\"volume\":\"272 \",\"pages\":\"Article 109056\"},\"PeriodicalIF\":4.8000,\"publicationDate\":\"2025-09-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer methods and programs in biomedicine\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0169260725004730\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer methods and programs in biomedicine","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0169260725004730","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
Neighboring tissues as diagnostic windows: Neighborhood effects in radiomic detection of pancreatic ductal adenocarcinoma
Objective
This study introduces a pioneering, tumor-independent diagnostic approach for Pancreatic Ductal Adenocarcinoma (PDAC), utilizing radiomic and deep features from non-tumorous CT regions to detect subtle, systemic tissue alterations beyond conventional imaging limits.
Materials and Methods
A retrospective cohort of 1263 patients was analyzed, including both PDAC and non-PDAC cases, with anatomical segmentation masks encompassing veins, arteries, pancreatic parenchyma, pancreatic duct, and common bile duct. Radiomic features (n = 107 per region) were extracted using the PyRadiomics library, while deep features were derived from a 3D convolutional autoencoder trained on cropped and normalized anatomical volumes. Three analytical approaches were implemented: (1) healthy tissue analysis using features exclusively from non-tumorous structures, (2) row-wise label combination treating each anatomical label as a separate instance, and (3) column-wise patient-level fusion aggregating multi-tissue features. Each dataset underwent multiple feature selection methods and was classified using ensemble and neural machine learning models. SHAP and t-SNE analyses were conducted for model interpretability and visualization.
Results
Radiomic analysis of non-tumorous anatomical regions demonstrated high diagnostic performance for PDAC detection, particularly in the pancreatic duct and parenchyma. Among the three approaches, patient-level feature aggregation (Approach 3) achieved the best results, with an F1-score of 88.33 % and AUC of 97.98 %. In contrast, deep features exhibited limited discriminative power when used in isolation but improved moderately in fusion strategies. SHAP and t-SNE analyses confirmed that tissue-wide radiomic signatures serve as robust biomarkers, supporting the hypothesis that PDAC induces detectable changes beyond the tumor region. These findings validate a novel, tumor-independent diagnostic framework for early PDAC classification.
Conclusions
Non-tumorous anatomical structures encode valuable diagnostic information for PDAC. Systemic feature integration provides a robust, interpretable framework for early detection, particularly in radiologically occult or ambiguous cases.
期刊介绍:
To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine.
Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.