Burcu Bosnalı , Erdinç Türk , Tahir Saygın Öğüt , Mert Ünal , Taner Danışman , Hatice Yazısız , Funda Erbasan , Mustafa Ender Terzioğlu , Veli Yazisiz
{"title":"人工智能在抗核抗体(ANA)阳性结缔组织疾病分类中的应用","authors":"Burcu Bosnalı , Erdinç Türk , Tahir Saygın Öğüt , Mert Ünal , Taner Danışman , Hatice Yazısız , Funda Erbasan , Mustafa Ender Terzioğlu , Veli Yazisiz","doi":"10.1016/j.compbiolchem.2025.108679","DOIUrl":null,"url":null,"abstract":"<div><h3>Objectives</h3><div>The study aimed to investigate the classification performance of artificial intelligence (AI) in diagnosing connective tissue diseases(CTD). This was done by analyzing laboratory data, including additional markers, in patients who tested positive for antinuclear antibody(ANA).</div></div><div><h3>Material/Methods</h3><div>The research included 663 ANA-positive patients. An automated machine learning approach, specifically Auto-Weka, was used to classify these patients based on 75 features, including age, sex, and various laboratory tests.</div></div><div><h3>Results</h3><div>The Bayes Network achieved the highest overall performance with 93.1 % accuracy, 77.7 % sensitivity, and 96.0 % specificity in the classification of all patients. The most successful models were <em>Locally Weighted Learning</em> for systemic lupus erythematosus(SLE), with an accuracy of 93.4 %; <em>Logistic Model Trees</em> for primary Sjogren's syndrome(pSS), with an accuracy of 91.4 %; <em>AdaBoostM</em> for rheumatoid arthritis(RA), with an accuracy of 95.2 %; and <em>Sequential Minimal Optimization</em> for systemic sclerosis(SSc), with an accuracy of 92.0 %. Sensitivity and specificity rates for SLE, pSS, RA and SSc were found to be 69.4 %, 72.0 %, 78.5 %, 75.3 % and 98.7 %, 96.2 %, 98.9 %, 94.9 %, respectively. The area under the ROC curve in the general distribution of the groups was 95.6 %, the highest value in distinguishing was 99.1 % for RA and the lowest was 85.1 % for SSc. The most predictive markers identified were hematocrit for SLE, anti-SSA for pSS, rheumatoid factor for RA, and anti-centromere B positivity for SSc.</div></div><div><h3>Conclusion</h3><div>AI models are highly successful in classifying ANA-positive patients with great accuracy. AI-based approaches have the potential to assist clinicians in diagnosing autoimmune diseases by providing more accurate and faster results.</div></div>","PeriodicalId":10616,"journal":{"name":"Computational Biology and Chemistry","volume":"120 ","pages":"Article 108679"},"PeriodicalIF":3.1000,"publicationDate":"2025-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Effectiveness of artificial intelligence in classification of connective tissue diseases in patients with anti-nuclear antibody (ANA) positivity\",\"authors\":\"Burcu Bosnalı , Erdinç Türk , Tahir Saygın Öğüt , Mert Ünal , Taner Danışman , Hatice Yazısız , Funda Erbasan , Mustafa Ender Terzioğlu , Veli Yazisiz\",\"doi\":\"10.1016/j.compbiolchem.2025.108679\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Objectives</h3><div>The study aimed to investigate the classification performance of artificial intelligence (AI) in diagnosing connective tissue diseases(CTD). This was done by analyzing laboratory data, including additional markers, in patients who tested positive for antinuclear antibody(ANA).</div></div><div><h3>Material/Methods</h3><div>The research included 663 ANA-positive patients. An automated machine learning approach, specifically Auto-Weka, was used to classify these patients based on 75 features, including age, sex, and various laboratory tests.</div></div><div><h3>Results</h3><div>The Bayes Network achieved the highest overall performance with 93.1 % accuracy, 77.7 % sensitivity, and 96.0 % specificity in the classification of all patients. The most successful models were <em>Locally Weighted Learning</em> for systemic lupus erythematosus(SLE), with an accuracy of 93.4 %; <em>Logistic Model Trees</em> for primary Sjogren's syndrome(pSS), with an accuracy of 91.4 %; <em>AdaBoostM</em> for rheumatoid arthritis(RA), with an accuracy of 95.2 %; and <em>Sequential Minimal Optimization</em> for systemic sclerosis(SSc), with an accuracy of 92.0 %. Sensitivity and specificity rates for SLE, pSS, RA and SSc were found to be 69.4 %, 72.0 %, 78.5 %, 75.3 % and 98.7 %, 96.2 %, 98.9 %, 94.9 %, respectively. The area under the ROC curve in the general distribution of the groups was 95.6 %, the highest value in distinguishing was 99.1 % for RA and the lowest was 85.1 % for SSc. The most predictive markers identified were hematocrit for SLE, anti-SSA for pSS, rheumatoid factor for RA, and anti-centromere B positivity for SSc.</div></div><div><h3>Conclusion</h3><div>AI models are highly successful in classifying ANA-positive patients with great accuracy. AI-based approaches have the potential to assist clinicians in diagnosing autoimmune diseases by providing more accurate and faster results.</div></div>\",\"PeriodicalId\":10616,\"journal\":{\"name\":\"Computational Biology and Chemistry\",\"volume\":\"120 \",\"pages\":\"Article 108679\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-09-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computational Biology and Chemistry\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S1476927125003408\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computational Biology and Chemistry","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S1476927125003408","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOLOGY","Score":null,"Total":0}
Effectiveness of artificial intelligence in classification of connective tissue diseases in patients with anti-nuclear antibody (ANA) positivity
Objectives
The study aimed to investigate the classification performance of artificial intelligence (AI) in diagnosing connective tissue diseases(CTD). This was done by analyzing laboratory data, including additional markers, in patients who tested positive for antinuclear antibody(ANA).
Material/Methods
The research included 663 ANA-positive patients. An automated machine learning approach, specifically Auto-Weka, was used to classify these patients based on 75 features, including age, sex, and various laboratory tests.
Results
The Bayes Network achieved the highest overall performance with 93.1 % accuracy, 77.7 % sensitivity, and 96.0 % specificity in the classification of all patients. The most successful models were Locally Weighted Learning for systemic lupus erythematosus(SLE), with an accuracy of 93.4 %; Logistic Model Trees for primary Sjogren's syndrome(pSS), with an accuracy of 91.4 %; AdaBoostM for rheumatoid arthritis(RA), with an accuracy of 95.2 %; and Sequential Minimal Optimization for systemic sclerosis(SSc), with an accuracy of 92.0 %. Sensitivity and specificity rates for SLE, pSS, RA and SSc were found to be 69.4 %, 72.0 %, 78.5 %, 75.3 % and 98.7 %, 96.2 %, 98.9 %, 94.9 %, respectively. The area under the ROC curve in the general distribution of the groups was 95.6 %, the highest value in distinguishing was 99.1 % for RA and the lowest was 85.1 % for SSc. The most predictive markers identified were hematocrit for SLE, anti-SSA for pSS, rheumatoid factor for RA, and anti-centromere B positivity for SSc.
Conclusion
AI models are highly successful in classifying ANA-positive patients with great accuracy. AI-based approaches have the potential to assist clinicians in diagnosing autoimmune diseases by providing more accurate and faster results.
期刊介绍:
Computational Biology and Chemistry publishes original research papers and review articles in all areas of computational life sciences. High quality research contributions with a major computational component in the areas of nucleic acid and protein sequence research, molecular evolution, molecular genetics (functional genomics and proteomics), theory and practice of either biology-specific or chemical-biology-specific modeling, and structural biology of nucleic acids and proteins are particularly welcome. Exceptionally high quality research work in bioinformatics, systems biology, ecology, computational pharmacology, metabolism, biomedical engineering, epidemiology, and statistical genetics will also be considered.
Given their inherent uncertainty, protein modeling and molecular docking studies should be thoroughly validated. In the absence of experimental results for validation, the use of molecular dynamics simulations along with detailed free energy calculations, for example, should be used as complementary techniques to support the major conclusions. Submissions of premature modeling exercises without additional biological insights will not be considered.
Review articles will generally be commissioned by the editors and should not be submitted to the journal without explicit invitation. However prospective authors are welcome to send a brief (one to three pages) synopsis, which will be evaluated by the editors.