使用生物信息学和二硫嘧啶靶向计算药物发现鉴定心肌梗死的诊断生物标志物。

IF 4.2 3区 医学 Q2 CELL BIOLOGY
Mediators of Inflammation Pub Date : 2025-09-02 eCollection Date: 2025-01-01 DOI:10.1155/mi/5054377
Haoran Zhang, Ziguang Song, Weitao Shen, Donghui Zhang
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引用次数: 0

摘要

双曲下垂是一种新发现的受调节细胞死亡形式,涉及多种疾病过程。本研究应用计算方法鉴定心肌梗死(MI)中二硫塌陷相关基因。使用limma软件包筛选GSE66360数据集中的差异表达基因(deg),并与加权基因共表达网络分析(WGCNA)模块中的基因相交获得候选基因。通过支持向量机递归特征消除(SVM-RFE)和最小绝对收缩和选择算子(LASSO)选择生物标志物,并通过定量实时(qRT)-PCR、CCK-8和流式细胞术进行验证。利用clusterProfiler和CIBERSORT工具进行富集和免疫浸润分析。通过Coremine数据库预测潜在药物,并用Cytoscape进行可视化。使用Seurat和CellChat软件包分别进行单细胞转录组分析和建立细胞-细胞通信网络。选择与免疫评分相关性最高的浅绿色模块中的基因。接下来,我们鉴定了10个生物标志物(THBD、IRAK3、NFIL3、IL1R2、THBS1、MAP3K8、JDP2、FCGR2A、CCL20和EREG),它们在ac16氧葡萄糖剥夺(OGD)细胞中的mRNA水平均显著高于对照组。沉默MAP3K8和NFIL3可提高AC16-OGD细胞的活力,减少细胞凋亡。免疫浸润分析提示NFIL3和MAP3K8调节T细胞功能,参与心肌梗死发病。药物分析预测了15种靶向NFIL3和MAP3K8的候选药物。单细胞分析显示,心肌梗死中有六种细胞类型,脂肪细胞作为通信枢纽与心肌细胞、成纤维细胞、内皮细胞和巨噬细胞密切相互作用。这些发现突出了已鉴定的生物标志物作为心肌梗死新治疗靶点的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Identification of Diagnostic Biomarkers for Myocardial Infarction Using Bioinformatics and Disulfidptosis-Targeted Computational Drug Discovery.

Identification of Diagnostic Biomarkers for Myocardial Infarction Using Bioinformatics and Disulfidptosis-Targeted Computational Drug Discovery.

Identification of Diagnostic Biomarkers for Myocardial Infarction Using Bioinformatics and Disulfidptosis-Targeted Computational Drug Discovery.

Identification of Diagnostic Biomarkers for Myocardial Infarction Using Bioinformatics and Disulfidptosis-Targeted Computational Drug Discovery.

Disulfidptosis, a newly discovered form of regulated cell death, is involved in multiple disease processes. This study applied computational methods to identify disulfidptosis-related genes in myocardial infarction (MI). Differentially expressed genes (DEGs) from GSE66360 dataset were screened using the limma package and intersected with genes in weighted gene coexpression network analysis (WGCNA) modules to obtain candidate genes. Biomarkers were selected via support vector machine-recursive feature elimination (SVM-RFE) and least absolute shrinkage and selection operator (LASSO), and validated by quantitative real-time (qRT)-PCR, CCK-8, and flow cytometry. Enrichment and immune infiltration analyses were performed using clusterProfiler and CIBERSORT tools. Potential drugs were predicted via the Coremine database and visualized with Cytoscape. Seurat and CellChat packages were employed to perform single-cell transcriptomic analysis and develop cell-cell communication network, respectively. The genes in the lightgreen module that had the highest correlation with immune scores were selected. Next, we identified 10 biomarkers (THBD, IRAK3, NFIL3, IL1R2, THBS1, MAP3K8, JDP2, FCGR2A, CCL20, and EREG), all of which showed significantly higher mRNA levels in AC16-oxygen-glucose deprivation (OGD) cells compared to controls. Silencing MAP3K8 and NFIL3 enhanced cell viability and reduced apoptosis in AC16-OGD cells. Immune infiltration analysis suggested that NFIL3 and MAP3K8 modulated T cell function, contributing to MI pathogenesis. Drug analysis predicted 15 candidate drugs targeting both NFIL3 and MAP3K8. Single-cell analysis showed that distinguished six cell types in MI, with adipocytes serving as a communication hub interacting closely with cardiomyocytes, fibroblasts, endothelial cells, and macrophages. These findings highlighted the potential of the identified biomarkers as novel therapeutic targets for MI.

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来源期刊
Mediators of Inflammation
Mediators of Inflammation 医学-免疫学
CiteScore
8.70
自引率
0.00%
发文量
202
审稿时长
4 months
期刊介绍: Mediators of Inflammation is a peer-reviewed, Open Access journal that publishes original research and review articles on all types of inflammatory mediators, including cytokines, histamine, bradykinin, prostaglandins, leukotrienes, PAF, biological response modifiers and the family of cell adhesion-promoting molecules.
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