蓝藻α-葡聚糖磷酸化酶的生化表征和初步x射线晶体学分析。

IF 1.1 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS
Airi Ikuta, Eiji Suzuki, Ryuichiro Suzuki
{"title":"蓝藻α-葡聚糖磷酸化酶的生化表征和初步x射线晶体学分析。","authors":"Airi Ikuta,&nbsp;Eiji Suzuki,&nbsp;Ryuichiro Suzuki","doi":"10.1107/S2053230X25007770","DOIUrl":null,"url":null,"abstract":"<p>Several cyanobacterial species, including <i>Crocosphaera subtropica</i> ATCC 51142, accumulate cyanobacterial starch instead of glycogen, although nearly all cyanobacteria accumulate glycogen. The glycogen-producing <i>Synechococcus elongatus</i> PCC 7942 possesses one α-glucan phosphorylase (Pho) isozyme, whereas strain 51142 has three Pho isozymes. Based on their primary structures, these enzymes belong to glycosyl transferase (GT) family 35, with the cyanobacterial GT35-type Phos further subdivided into types I–III. In this study, to elucidate the significance of the coexistence of multiple GT35-type Pho isozymes, those from strain 51142 (type I, cce_1629; type II, cce_1603 and cce_5186) and strain 7942 (type I, Synpcc7942_0244) were overexpressed in <i>Escherichia coli</i> and biochemically characterized. All isozymes catalysed the phosphorolysis and reverse phosphorolysis reactions. The type I isozyme from a cyanobacterial starch-producing strain (cce_1629) differed in substrate specificity and specific activity compared with the others. The behaviour towards the effectors (AMP and ATP) of the type I and type II isozymes differed from each other. These findings enhance our understanding of the roles of cyanobacterial Pho isozymes in α-glucan metabolism. Furthermore, recombinant cce_1603 was crystallized using the hanging-drop vapour-diffusion method. Crystals were obtained at 293 K in the presence of 10 m<i>M</i> maltoheptaose, 45%(<i>w</i>/<i>v</i>) PEG 400, 0.1 <i>M</i> Tris–HCl pH 8.0, 0.2 <i>M</i> lithium sulfate. The crystals belonged to space group <i>R</i>32 (hexagonal setting) with unit-cell parameters <i>a</i> = <i>b</i> = 267.23, <i>c</i> = 204.43 Å, and diffracted to beyond 2.70 Å resolution. Matthews coefficient calculations indicated the presence of two molecules in the asymmetric unit. Structural determination is currently under way. The crystal structure of cce_1603 will aid in the understanding of the structural basis of cyanobacterial GT35-type Pho isozymes.</p>","PeriodicalId":7029,"journal":{"name":"Acta crystallographica. Section F, Structural biology communications","volume":"81 10","pages":"417-424"},"PeriodicalIF":1.1000,"publicationDate":"2025-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Biochemical characterization and preliminary X-ray crystallographic analysis of cyanobacterial α-glucan phosphorylases\",\"authors\":\"Airi Ikuta,&nbsp;Eiji Suzuki,&nbsp;Ryuichiro Suzuki\",\"doi\":\"10.1107/S2053230X25007770\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Several cyanobacterial species, including <i>Crocosphaera subtropica</i> ATCC 51142, accumulate cyanobacterial starch instead of glycogen, although nearly all cyanobacteria accumulate glycogen. The glycogen-producing <i>Synechococcus elongatus</i> PCC 7942 possesses one α-glucan phosphorylase (Pho) isozyme, whereas strain 51142 has three Pho isozymes. Based on their primary structures, these enzymes belong to glycosyl transferase (GT) family 35, with the cyanobacterial GT35-type Phos further subdivided into types I–III. In this study, to elucidate the significance of the coexistence of multiple GT35-type Pho isozymes, those from strain 51142 (type I, cce_1629; type II, cce_1603 and cce_5186) and strain 7942 (type I, Synpcc7942_0244) were overexpressed in <i>Escherichia coli</i> and biochemically characterized. All isozymes catalysed the phosphorolysis and reverse phosphorolysis reactions. The type I isozyme from a cyanobacterial starch-producing strain (cce_1629) differed in substrate specificity and specific activity compared with the others. The behaviour towards the effectors (AMP and ATP) of the type I and type II isozymes differed from each other. These findings enhance our understanding of the roles of cyanobacterial Pho isozymes in α-glucan metabolism. Furthermore, recombinant cce_1603 was crystallized using the hanging-drop vapour-diffusion method. Crystals were obtained at 293 K in the presence of 10 m<i>M</i> maltoheptaose, 45%(<i>w</i>/<i>v</i>) PEG 400, 0.1 <i>M</i> Tris–HCl pH 8.0, 0.2 <i>M</i> lithium sulfate. The crystals belonged to space group <i>R</i>32 (hexagonal setting) with unit-cell parameters <i>a</i> = <i>b</i> = 267.23, <i>c</i> = 204.43 Å, and diffracted to beyond 2.70 Å resolution. Matthews coefficient calculations indicated the presence of two molecules in the asymmetric unit. Structural determination is currently under way. The crystal structure of cce_1603 will aid in the understanding of the structural basis of cyanobacterial GT35-type Pho isozymes.</p>\",\"PeriodicalId\":7029,\"journal\":{\"name\":\"Acta crystallographica. Section F, Structural biology communications\",\"volume\":\"81 10\",\"pages\":\"417-424\"},\"PeriodicalIF\":1.1000,\"publicationDate\":\"2025-09-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta crystallographica. Section F, Structural biology communications\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1107/S2053230X25007770\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta crystallographica. Section F, Structural biology communications","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1107/S2053230X25007770","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

摘要

几种蓝藻物种,包括亚热带鳄鱼ATCC 51142,积累蓝藻淀粉而不是糖原,尽管几乎所有的蓝藻都积累糖原。产糖原的长聚球菌PCC 7942具有1个α-葡聚糖磷酸化酶(Pho)同工酶,而菌株51142具有3个Pho同工酶。根据它们的初级结构,这些酶属于糖基转移酶(GT)家族35,蓝藻gt35型Phos进一步细分为I-III型。为了阐明多种gt35型Pho同工酶共存的意义,本研究对菌株51142 (I型,cce_1629; II型,cce_1603和cce_5186)和菌株7942 (I型,Synpcc7942_0244)的同工酶在大肠杆菌中过表达并进行了生化表征。所有同工酶都催化了磷酸解和反磷酸解反应。一种产淀粉蓝藻菌株(cce_1629)的I型同工酶在底物特异性和比活性方面与其他菌株不同。I型和II型同工酶对效应器(AMP和ATP)的行为不同。这些发现增强了我们对蓝藻Pho同工酶在α-葡聚糖代谢中的作用的理解。此外,重组cce_1603采用悬垂气相扩散法结晶。在293 K、10 mM麦芽糖七糖、45%(w/v) PEG 400、0.1 M Tris-HCl pH 8.0、0.2 M硫酸锂存在的条件下获得晶体。晶体属于空间群R32(六边形设置),晶胞参数a = b = 267.23, c = 204.43 Å,衍射分辨率超过2.70 Å。马修斯系数计算表明,不对称单元中存在两个分子。目前正在进行结构确定。cce_1603的晶体结构有助于了解蓝藻gt35型Pho同工酶的结构基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Biochemical characterization and preliminary X-ray crystallographic analysis of cyanobacterial α-glucan phosphorylases

Biochemical characterization and preliminary X-ray crystallographic analysis of cyanobacterial α-glucan phosphorylases

Several cyanobacterial species, including Crocosphaera subtropica ATCC 51142, accumulate cyanobacterial starch instead of glycogen, although nearly all cyanobacteria accumulate glycogen. The glycogen-producing Synechococcus elongatus PCC 7942 possesses one α-glucan phosphorylase (Pho) isozyme, whereas strain 51142 has three Pho isozymes. Based on their primary structures, these enzymes belong to glycosyl transferase (GT) family 35, with the cyanobacterial GT35-type Phos further subdivided into types I–III. In this study, to elucidate the significance of the coexistence of multiple GT35-type Pho isozymes, those from strain 51142 (type I, cce_1629; type II, cce_1603 and cce_5186) and strain 7942 (type I, Synpcc7942_0244) were overexpressed in Escherichia coli and biochemically characterized. All isozymes catalysed the phosphorolysis and reverse phosphorolysis reactions. The type I isozyme from a cyanobacterial starch-producing strain (cce_1629) differed in substrate specificity and specific activity compared with the others. The behaviour towards the effectors (AMP and ATP) of the type I and type II isozymes differed from each other. These findings enhance our understanding of the roles of cyanobacterial Pho isozymes in α-glucan metabolism. Furthermore, recombinant cce_1603 was crystallized using the hanging-drop vapour-diffusion method. Crystals were obtained at 293 K in the presence of 10 mM maltoheptaose, 45%(w/v) PEG 400, 0.1 M Tris–HCl pH 8.0, 0.2 M lithium sulfate. The crystals belonged to space group R32 (hexagonal setting) with unit-cell parameters a = b = 267.23, c = 204.43 Å, and diffracted to beyond 2.70 Å resolution. Matthews coefficient calculations indicated the presence of two molecules in the asymmetric unit. Structural determination is currently under way. The crystal structure of cce_1603 will aid in the understanding of the structural basis of cyanobacterial GT35-type Pho isozymes.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Acta crystallographica. Section F, Structural biology communications
Acta crystallographica. Section F, Structural biology communications BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
1.90
自引率
0.00%
发文量
95
期刊介绍: Acta Crystallographica Section F is a rapid structural biology communications journal. Articles on any aspect of structural biology, including structures determined using high-throughput methods or from iterative studies such as those used in the pharmaceutical industry, are welcomed by the journal. The journal offers the option of open access, and all communications benefit from unlimited free use of colour illustrations and no page charges. Authors are encouraged to submit multimedia content for publication with their articles. Acta Cryst. F has a dedicated online tool called publBio that is designed to make the preparation and submission of articles easier for authors.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信