基于BLUP的干旱适应指数(DAI)在柳枝稷抗旱种质资源选择中的应用

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY
Frontiers in Genetics Pub Date : 2025-08-25 eCollection Date: 2025-01-01 DOI:10.3389/fgene.2025.1626083
Shiva Om Makaju, Hari Bahadur Chhetri, Chanaka Roshan Abeyratne, Mirko Pavicic, Hari Poudel, Jazib Ali Irfan, Anita Giabardo, Katrien M Devos, Daniel Jacobson, Ali Mekki Missaoui
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引用次数: 0

摘要

采用最佳线性无偏预测(BLUP)方法,建立了柳枝草(Panicum virgatum L.)干旱适应指数(DAI)。在连续四年(2019-2022)的干旱胁迫(CV)和水分充足(UC)条件下,对404个基因型进行了评估。使用blup估计的生物量产量来计算DAI,从而将基因型分为四个适应组:非常适应组、良好适应组、适应组和不适应组。将DAI与常规抗旱指标,包括抗旱敏感性指数(SSI)、抗旱耐受性指数(STI)、几何平均生产力(GMP)和产量稳定性指数(YSI)进行比较。相关分析表明DAI与这些指标之间具有较强的一致性,支持其有效性和一致性。利用基因型加基因型-环境相互作用(GGE)和可加性主效应和乘法相互作用(AMMI)模型进行双图分析,发现基因型-环境相互作用(GEI)显著,并鉴定出J222。J463。A,和J295.A。A为高性能基因型,具有J222。A在不同处理和年份表现出更大的产量稳定性。此外,DAI等值线曲线提供了干旱和对照条件下不同基因型表现的图形化表示。这些可视化有助于在不同环境中区分具有稳定和优越生物量产量的基因型。总的来说,基于blup的DAI是一种强大而实用的选择工具,可以提高鉴定抗旱高产柳枝稷基因型的准确性。将其整合到育种计划中,为提高生物量生产力和适应多变气候条件下的压力提供了一个全面的框架。DAI的应用支持了气候适应型品种的开发,并有助于可持续的生物能源和饲料生产系统。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Drought adaptation index (DAI) based on BLUP as a selection approach for drought-resilient switchgrass germplasm.

This study introduces a Drought Adaptation Index (DAI), derived from Best Linear Unbiased Prediction (BLUP), as a method to assess drought resilience in switchgrass (Panicum virgatum L.). A panel of 404 genotypes was evaluated under drought-stressed (CV) and well-watered (UC) conditions over four consecutive years (2019-2022). BLUP-estimated biomass yields were used to calculate the DAI, which enabled classification of genotypes into four adaptation groups: very well-adapted, well-adapted, adapted, and unadapted. The DAI was compared with conventional drought tolerance indices, including the Stress Susceptibility Index (SSI), Stress Tolerance Index (STI), Geometric Mean Productivity (GMP), and Yield Stability Index (YSI). Correlation analyses demonstrated strong agreement between DAI and these indices, supporting its validity and consistency. Biplot analyses using the Genotype plus Genotype-by-Environment Interaction (GGE) and Additive Main Effects and Multiplicative Interaction (AMMI) models revealed significant genotype-by-environment interactions (GEI) and identified J222.A, J463.A, and J295.A. A as high-performing genotypes, with J222.A exhibiting greater yield stability across treatments and years. Additionally, DAI isoline curves provided a graphical representation of differential genotype performance under drought and control conditions. These visualizations aided in distinguishing genotypes with stable and superior biomass yield across contrasting environments. Overall, the BLUP-based DAI is a robust and practical selection tool that improves the accuracy of identifying drought-resilient, high-yielding switchgrass genotypes. Its integration into breeding programs offers a comprehensive framework for improving biomass productivity and stress adaptation under variable climatic conditions. The application of DAI supports the development of climate-resilient cultivars and contributes to sustainable bioenergy and forage production systems.

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来源期刊
Frontiers in Genetics
Frontiers in Genetics Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍: Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public. The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.
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