在硅片工程中对哈茨木霉乙酰酯酶进行热稳定性和效率的提高。

IF 2.4 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ali Abolhasanzadeh Parizi, Milad Lagzian
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引用次数: 0

摘要

哈茨木霉产生的乙酰酯酶在纸浆生产过程中对半纤维素脱乙酰化起着至关重要的作用。这种酶的耐热变体虽然罕见,但可以通过在高温下保持活性来显着提高工业效率。本研究旨在利用计算方法设计哈氏霉oc -3844 (EC 3.1.1.6)乙酰酯酶的耐热变体。建立了酶的三维模型,并确定了稳定突变。在筛选的250多个突变体中,双突变体(D75C, E296L)被认为是最有希望的突变体。在37°C和70°C的200 ns分子动力学模拟中,该模型的性能优于天然酶。在70°C时,平均RMSD降低了30.7% (0.43 Å),平均RMSF降低了9.5% (0.06 Å),平均Rg降低了1.5% (0.29 Å),平均SASA降低了3.4% (4.6 nm2)。该突变体的平均分子内氢键增加36.5%,平均相互作用能提高42.3% (21.96 Kcal/mol)。主成分分析结果表明,双突变体在高温下保持了原酶的结构。这种变体表现出增强的热稳定性和催化活性,使其成为纸张生产中有害化学品(如氯)的有前途的环保替代品。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
In silico engineering of Trichoderma harzianum acetylesterase for enhanced thermal stability and efficiency.

Acetylesterase, produced by Trichoderma harzianum, plays a crucial role in deacetylating hemicellulose during pulp production. Thermostable variants of this enzyme, although rare, can significantly enhance industrial efficiency by retaining activity at high temperatures. This research aims to design a thermostable variant of acetylesterase from T. harzianum IOC-3844 (EC 3.1.1.6) using computational methods. A 3D model of the enzyme was created, and stabilizing mutations were identified. Among over 250 screened mutants, a double mutant (D75C, E296L) was recognized as the most promising variant. During 200 ns of molecular dynamics simulations at 37 °C and 70 °C, the model outperformed the native enzyme. At 70 °C, there was a 30.7% decrease in the mean RMSD (0.43 Å), a 9.5% reduction in the mean RMSF (0.06 Å), a 1.5% decrease in the mean Rg (0.29 Å) and a 3.4% reduction in the mean SASA (4.6 nm2). The mutant also displayed 36.5% more mean intramolecular hydrogen bonds and a 42.3% improvement in mean interaction energy (21.96 Kcal/mol). The PCA results showed that the double mutant maintains the native enzyme's structure at high temperatures. This variant exhibits enhanced thermal stability and catalytic activity, making it a promising eco-friendly alternative to harmful chemicals, such as chlorine, in paper production.

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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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