{"title":"震颤拟寄生虫的基因组。","authors":"Roger Meisal, Gyda Christophersen","doi":"10.1139/gen-2025-0015","DOIUrl":null,"url":null,"abstract":"<p><p>The sea cucumber <i>Parastichopus tremulus</i> is an important holothuroid species inhabiting the eastern North Atlantic Ocean benthic zone at depths from about 20 to 3000 m. Geographical distribution is from the Barents Sea in the north to the Canary Islands in the south. Along with the increasing commercial interest of new sea cucumber species, research into sea cucumber biology has also advanced. Recently, the genomes of tropical sea cucumber species have become available. However, genomes of cold-water sea cucumbers are still lacking. To fill this knowledge gap, both the mitochondrial genome and the nuclear genome of <i>P. tremulus</i> have been sequenced and assembled. Mitochondrial genome size and gene-organization closely matched what has been found for other holothuroids of the Stichopodidae family. The total nuclear genome assembly length was found to be 775 Mb at 24× coverage and achieved a final BUSCO completeness score of 87.2%.</p>","PeriodicalId":12809,"journal":{"name":"Genome","volume":" ","pages":"1-13"},"PeriodicalIF":1.7000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The genome of the holothuroid <i>Parastichopus tremulus</i>.\",\"authors\":\"Roger Meisal, Gyda Christophersen\",\"doi\":\"10.1139/gen-2025-0015\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The sea cucumber <i>Parastichopus tremulus</i> is an important holothuroid species inhabiting the eastern North Atlantic Ocean benthic zone at depths from about 20 to 3000 m. Geographical distribution is from the Barents Sea in the north to the Canary Islands in the south. Along with the increasing commercial interest of new sea cucumber species, research into sea cucumber biology has also advanced. Recently, the genomes of tropical sea cucumber species have become available. However, genomes of cold-water sea cucumbers are still lacking. To fill this knowledge gap, both the mitochondrial genome and the nuclear genome of <i>P. tremulus</i> have been sequenced and assembled. Mitochondrial genome size and gene-organization closely matched what has been found for other holothuroids of the Stichopodidae family. The total nuclear genome assembly length was found to be 775 Mb at 24× coverage and achieved a final BUSCO completeness score of 87.2%.</p>\",\"PeriodicalId\":12809,\"journal\":{\"name\":\"Genome\",\"volume\":\" \",\"pages\":\"1-13\"},\"PeriodicalIF\":1.7000,\"publicationDate\":\"2025-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Genome\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1139/gen-2025-0015\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Genome","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1139/gen-2025-0015","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
The genome of the holothuroid Parastichopus tremulus.
The sea cucumber Parastichopus tremulus is an important holothuroid species inhabiting the eastern North Atlantic Ocean benthic zone at depths from about 20 to 3000 m. Geographical distribution is from the Barents Sea in the north to the Canary Islands in the south. Along with the increasing commercial interest of new sea cucumber species, research into sea cucumber biology has also advanced. Recently, the genomes of tropical sea cucumber species have become available. However, genomes of cold-water sea cucumbers are still lacking. To fill this knowledge gap, both the mitochondrial genome and the nuclear genome of P. tremulus have been sequenced and assembled. Mitochondrial genome size and gene-organization closely matched what has been found for other holothuroids of the Stichopodidae family. The total nuclear genome assembly length was found to be 775 Mb at 24× coverage and achieved a final BUSCO completeness score of 87.2%.
期刊介绍:
Genome is a monthly journal, established in 1959, that publishes original research articles, reviews, mini-reviews, current opinions, and commentaries. Areas of interest include general genetics and genomics, cytogenetics, molecular and evolutionary genetics, developmental genetics, population genetics, phylogenomics, molecular identification, as well as emerging areas such as ecological, comparative, and functional genomics.