Nanna Gaun, Carlotta Pietroni, Garazi Martin-Bideguren, Jonas Lauritsen, Ostaizka Aizpurua, Joana M Fernandes, Eduardo Ferreira, Fabien Aubret, Tom Sarraude, Constant Perry, Lucas Wauters, Claudia Romeo, Martina Spada, Claudia Tranquillo, Alex O Sutton, Michael Griesser, Miyako H Warrington, Guillem Pérez I de Lanuza, Javier Abalos, Prem Aguilar, Ferran de la Cruz, Javier Juste, Pedro Alonso-Alonso, Jim Groombridge, Rebecca Louch, Kevin Ruhomaun, Sion Henshaw, Carlos Cabido, Ion Garin Barrio, Emina Šunje, Peter Hosner, Ivan Prates, Geoffrey M While, Roberto García-Roa, Tobias Uller, Nathalie Feiner, Elisa Bonaccorso, Pernille Klein-Ipsen, Rosalina Molberg Rotovnik, Antton Alberdi, Raphael Eisenhofer
{"title":"地球全基因组计划：数据发布1。","authors":"Nanna Gaun, Carlotta Pietroni, Garazi Martin-Bideguren, Jonas Lauritsen, Ostaizka Aizpurua, Joana M Fernandes, Eduardo Ferreira, Fabien Aubret, Tom Sarraude, Constant Perry, Lucas Wauters, Claudia Romeo, Martina Spada, Claudia Tranquillo, Alex O Sutton, Michael Griesser, Miyako H Warrington, Guillem Pérez I de Lanuza, Javier Abalos, Prem Aguilar, Ferran de la Cruz, Javier Juste, Pedro Alonso-Alonso, Jim Groombridge, Rebecca Louch, Kevin Ruhomaun, Sion Henshaw, Carlos Cabido, Ion Garin Barrio, Emina Šunje, Peter Hosner, Ivan Prates, Geoffrey M While, Roberto García-Roa, Tobias Uller, Nathalie Feiner, Elisa Bonaccorso, Pernille Klein-Ipsen, Rosalina Molberg Rotovnik, Antton Alberdi, Raphael Eisenhofer","doi":"10.1093/gigascience/giaf102","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>The Earth Hologenome Initiative (EHI) is a global endeavor dedicated to revisit fundamental ecological and evolutionary questions from the systemic host-microbiota perspective, through the standardized generation and analysis of joint animal genomic and associated microbial metagenomic data.</p><p><strong>Results: </strong>The first data release of the EHI contains 968 shotgun DNA sequencing read files containing 5.2 TB of raw genomic and metagenomic data derived from 21 vertebrate species sampled across 12 countries, as well as 17,666 metagenome-assembled genomes reconstructed from these data.</p><p><strong>Conclusions: </strong>The dataset can be used to address fundamental questions about host-microbiota interactions and will be available to the research community under the EHI data usage conditions.</p>","PeriodicalId":12581,"journal":{"name":"GigaScience","volume":"14 ","pages":""},"PeriodicalIF":11.8000,"publicationDate":"2025-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12412122/pdf/","citationCount":"0","resultStr":"{\"title\":\"The Earth Hologenome Initiative: Data Release 1.\",\"authors\":\"Nanna Gaun, Carlotta Pietroni, Garazi Martin-Bideguren, Jonas Lauritsen, Ostaizka Aizpurua, Joana M Fernandes, Eduardo Ferreira, Fabien Aubret, Tom Sarraude, Constant Perry, Lucas Wauters, Claudia Romeo, Martina Spada, Claudia Tranquillo, Alex O Sutton, Michael Griesser, Miyako H Warrington, Guillem Pérez I de Lanuza, Javier Abalos, Prem Aguilar, Ferran de la Cruz, Javier Juste, Pedro Alonso-Alonso, Jim Groombridge, Rebecca Louch, Kevin Ruhomaun, Sion Henshaw, Carlos Cabido, Ion Garin Barrio, Emina Šunje, Peter Hosner, Ivan Prates, Geoffrey M While, Roberto García-Roa, Tobias Uller, Nathalie Feiner, Elisa Bonaccorso, Pernille Klein-Ipsen, Rosalina Molberg Rotovnik, Antton Alberdi, Raphael Eisenhofer\",\"doi\":\"10.1093/gigascience/giaf102\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>The Earth Hologenome Initiative (EHI) is a global endeavor dedicated to revisit fundamental ecological and evolutionary questions from the systemic host-microbiota perspective, through the standardized generation and analysis of joint animal genomic and associated microbial metagenomic data.</p><p><strong>Results: </strong>The first data release of the EHI contains 968 shotgun DNA sequencing read files containing 5.2 TB of raw genomic and metagenomic data derived from 21 vertebrate species sampled across 12 countries, as well as 17,666 metagenome-assembled genomes reconstructed from these data.</p><p><strong>Conclusions: </strong>The dataset can be used to address fundamental questions about host-microbiota interactions and will be available to the research community under the EHI data usage conditions.</p>\",\"PeriodicalId\":12581,\"journal\":{\"name\":\"GigaScience\",\"volume\":\"14 \",\"pages\":\"\"},\"PeriodicalIF\":11.8000,\"publicationDate\":\"2025-01-06\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12412122/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"GigaScience\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1093/gigascience/giaf102\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"GigaScience","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1093/gigascience/giaf102","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
Background: The Earth Hologenome Initiative (EHI) is a global endeavor dedicated to revisit fundamental ecological and evolutionary questions from the systemic host-microbiota perspective, through the standardized generation and analysis of joint animal genomic and associated microbial metagenomic data.
Results: The first data release of the EHI contains 968 shotgun DNA sequencing read files containing 5.2 TB of raw genomic and metagenomic data derived from 21 vertebrate species sampled across 12 countries, as well as 17,666 metagenome-assembled genomes reconstructed from these data.
Conclusions: The dataset can be used to address fundamental questions about host-microbiota interactions and will be available to the research community under the EHI data usage conditions.
期刊介绍：
GigaScience seeks to transform data dissemination and utilization in the life and biomedical sciences. As an online open-access open-data journal, it specializes in publishing "big-data" studies encompassing various fields. Its scope includes not only "omic" type data and the fields of high-throughput biology currently serviced by large public repositories, but also the growing range of more difficult-to-access data, such as imaging, neuroscience, ecology, cohort data, systems biology and other new types of large-scale shareable data.
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